Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

error during make (fatal error: spdlog/fmt/ostr.h: No such file or directory) #114

Open
taehyong opened this issue Jun 17, 2019 · 0 comments

Comments

@taehyong
Copy link

Hi! I have an error during make as below. It seems like it is complaining the missing file. I tried both github and gz file but both did work for me. Please help me out! Thanks!

[ 73%] Building CXX object src/CMakeFiles/sailfish_core.dir/SailfishIndexer.cpp.o
cd /project/qlong_ibi_lab/tools/sailfish-0.9.2/src && /project/ibilab/hpctools/miniconda3/bin/c++ -pthread -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DRAPMAP_SALMON_SUPPORT -Wall -std=c++11 -Wreturn-type -Werror=return-type -static-libstdc++ -Wno-deprecated-register -Wno-unused-local-typedefs -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/tests -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/include -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/include/eigen3 -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/cereal/include -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/install/include -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/install/include/rapmap -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/install/include/jellyfish-2.2.3 -o CMakeFiles/sailfish_core.dir/SailfishIndexer.cpp.o -c /project/qlong_ibi_lab/tools/sailfish-0.9.2/src/SailfishIndexer.cpp
In file included from /project/qlong_ibi_lab/tools/sailfish-0.9.2/src/SailfishIndexer.cpp:60:0:
/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/install/include/rapmap/RapMapSAIndex.hpp:31:29: fatal error: spdlog/fmt/ostr.h: No such file or directory
compilation terminated.
make[2]: *** [src/CMakeFiles/sailfish_core.dir/SailfishIndexer.cpp.o] Error 1
make[2]: Leaving directory /project/qlong_ibi_lab/tools/sailfish-0.9.2' make[1]: *** [src/CMakeFiles/sailfish_core.dir/all] Error 2 make[1]: Leaving directory /project/qlong_ibi_lab/tools/sailfish-0.9.2'
make: *** [all] Error 2
[taehyong@node062 sailfish-0.9.2]$

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant