how to use hippunfold with CBRAIN Web-based Platform

[rzxxzxy]

When I select the task parameters, this problem appears. I don’t know where I went wrong?

[rzxxzxy]

@akhanf dear professor Ali R Khan, please help me, thanks!

[akhanf]

Looks like you are passing it a nifti when you need to pass it the subject directory (sub-01) that contains anat/sub-01_T1w.nii

[rzxxzxy]

But I don not know how to pass a folder, I can only select a file and not a folder.

[rzxxzxy]

@akhanf dear professor Ali R Khan, I am sorry to bother you again, but I still failed. Could you please record a video with a sample? Than you very much!

[jordandekraker]

In this example, you need to either:

• create a folder structure online on CBRAINs, so hippunfold can accept a BIDS folder as input
  OR
• use the --path_T1w to point directly to the nii file (e.g. hippunfold . output participant --path_T1w sub-{subject}_T1w.nii.gz). I believe this will show up as optional arguments in CBRAINs, but its been a while since I've used it