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I tried to make a wordpress plugin out of your awesome code, so I also have to put the mindmap in a div-container (#js-mindmap). Your advise worked nearly, but nevertheless all anchor elements are put into body element, so the mindmap always overlaps all other content.
I had this same issue. I'll try to clean up my solution enough to be worthy of adding to the js-mindmap project for others to take advantage of. It proved tricksier than just updating the line for Raphael.
More of a question than issue, but is there an easy way to adjust Raphael to have the mindmap fit inside a DIV instead of using the body tag?
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