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  1. churchill-lab/g2gtools churchill-lab/g2gtools Public

    Personal diploid genome creation and coordinate conversion

    Python 22 9

  2. churchill-lab/alntools churchill-lab/alntools Public

    Preprocess bam file into a compressed alignment incidence matrix (equivalence class)

    Python 2 1

  3. churchill-lab/emase churchill-lab/emase Public

    Expectation-Maximization algorithm for Allele-Specific Expression

    Python 21 13

  4. churchill-lab/emase-zero churchill-lab/emase-zero Public

    C++ Implementation of EMASE

    C++ 6 2

  5. churchill-lab/gbrs churchill-lab/gbrs Public

    Genotype-free genome reconstruction and ASE quantification

    Python 8 3

  6. churchill-lab/scRATE churchill-lab/scRATE Public

    Bayesian model selection to detect zero-inflated genes

    R 8 1