From 2e47ca10d726e1633a10db4603571a3889a7693e Mon Sep 17 00:00:00 2001 From: David Brochart Date: Mon, 8 Apr 2024 17:49:13 +0200 Subject: [PATCH 01/10] Support server-side execution --- jupyter_collaboration/app.py | 8 + packages/collaboration-extension/package.json | 27 +- .../src/collaboration.ts | 64 +- packages/collaboration-extension/src/index.ts | 6 +- yarn.lock | 7581 ++++++++++------- 5 files changed, 4513 insertions(+), 3173 deletions(-) diff --git a/jupyter_collaboration/app.py b/jupyter_collaboration/app.py index 2c35982e..321d1185 100644 --- a/jupyter_collaboration/app.py +++ b/jupyter_collaboration/app.py @@ -57,6 +57,14 @@ class YDocExtension(ExtensionApp): directory.""", ) + server_side_execution = Bool( + False, + config=True, + help="""Whether to execute notebooks in the server using the REST API, not using the kernel + protocol over WebSocket. The frontend only interacts with the notebook through its shared + model.""", + ) + def initialize(self): super().initialize() self.serverapp.event_logger.register_event_schema(EVENTS_SCHEMA_PATH) diff --git a/packages/collaboration-extension/package.json b/packages/collaboration-extension/package.json index e8812ce1..23381deb 100644 --- a/packages/collaboration-extension/package.json +++ b/packages/collaboration-extension/package.json @@ -56,20 +56,20 @@ "@jupyter/collaboration": "^2.0.11", "@jupyter/docprovider": "^2.0.11", "@jupyter/ydoc": "^1.1.0-a0", - "@jupyterlab/application": "^4.0.5", - "@jupyterlab/apputils": "^4.0.5", - "@jupyterlab/codemirror": "^4.0.5", + "@jupyterlab/application": "^4.2.0-beta.0", + "@jupyterlab/apputils": "^4.2.0-beta.0", + "@jupyterlab/codemirror": "^4.2.0-beta.0", "@jupyterlab/coreutils": "^6.0.5", - "@jupyterlab/docregistry": "^4.0.5", - "@jupyterlab/filebrowser": "^4.0.5", - "@jupyterlab/fileeditor": "^4.0.5", - "@jupyterlab/logconsole": "^4.0.5", - "@jupyterlab/notebook": "^4.0.5", + "@jupyterlab/docregistry": "^4.2.0-beta.0", + "@jupyterlab/filebrowser": "^4.2.0-beta.0", + "@jupyterlab/fileeditor": "^4.2.0-beta.0", + "@jupyterlab/logconsole": "^4.2.0-beta.0", + "@jupyterlab/notebook": "^4.2.0-beta.0", "@jupyterlab/services": "^7.0.5", - "@jupyterlab/settingregistry": "^4.0.5", - "@jupyterlab/statedb": "^4.0.5", - "@jupyterlab/translation": "^4.0.5", - "@jupyterlab/ui-components": "^4.0.5", + "@jupyterlab/settingregistry": "^4.2.0-beta.0", + "@jupyterlab/statedb": "^4.2.0-beta.0", + "@jupyterlab/translation": "^4.2.0-beta.0", + "@jupyterlab/ui-components": "^4.2.0-beta.0", "@lumino/commands": "^2.1.0", "@lumino/widgets": "^2.1.0", "y-protocols": "^1.0.5", @@ -97,7 +97,8 @@ "schemaDir": "./schema", "outputDir": "../../jupyter_collaboration/labextension", "disabledExtensions": [ - "@jupyterlab/filebrowser-extension:defaultFileBrowser" + "@jupyterlab/filebrowser-extension:defaultFileBrowser", + "@jupyterlab/notebook-extension:cell-executor" ], "sharedPackages": { "@codemirror/state": { diff --git a/packages/collaboration-extension/src/collaboration.ts b/packages/collaboration-extension/src/collaboration.ts index e2502bca..a70ef7fb 100644 --- a/packages/collaboration-extension/src/collaboration.ts +++ b/packages/collaboration-extension/src/collaboration.ts @@ -14,9 +14,11 @@ import { EditorExtensionRegistry, IEditorExtensionRegistry } from '@jupyterlab/codemirror'; +import { type MarkdownCell } from '@jupyterlab/cells'; +import { INotebookCellExecutor, runCell } from '@jupyterlab/notebook'; import { WebSocketAwarenessProvider } from '@jupyter/docprovider'; import { SidePanel, usersIcon } from '@jupyterlab/ui-components'; -import { URLExt } from '@jupyterlab/coreutils'; +import { PageConfig, URLExt } from '@jupyterlab/coreutils'; import { ServerConnection } from '@jupyterlab/services'; import { IStateDB, StateDB } from '@jupyterlab/statedb'; import { ITranslator, nullTranslator } from '@jupyterlab/translation'; @@ -189,3 +191,63 @@ export const userEditorCursors: JupyterFrontEndPlugin = { }); } }; + +export const notebookCellExecutor: JupyterFrontEndPlugin = { + id: '@jupyter/collaboration-extension:notebook-cell-executor', + description: + 'Add notebook cell executor that uses REST API instead of kernel protocol over WebSocket.', + autoStart: true, + provides: INotebookCellExecutor, + activate: ( + app: JupyterFrontEnd + ): INotebookCellExecutor => { + if (PageConfig.getOption('serverSideExecution') === 'true') { + return Object.freeze({ runCell: runCellServerSide }); + } + return Object.freeze({ runCell }); + } +}; + + +async function runCellServerSide({ + cell, + notebook, + notebookConfig, + onCellExecuted, + onCellExecutionScheduled, + sessionContext, + sessionDialogs, + translator +}: INotebookCellExecutor.IRunCellOptions): Promise { + switch (cell.model.type) { + case 'markdown': + (cell as MarkdownCell).rendered = true; + cell.inputHidden = false; + onCellExecuted({ cell, success: true }); + break; + case 'code': + const kernelId = sessionContext?.session?.kernel?.id; + const settings = ServerConnection.makeSettings(); + const apiURL = URLExt.join( + settings.baseUrl, + `api/kernels/${kernelId}/execute` + ); + const cellId = cell.model.sharedModel.getId(); + const documentId = `json:notebook:${notebook.sharedModel.getState( + 'file_id' + )}`; + const body = `{"cell_id":"${cellId}","document_id":"${documentId}"}`; + const init = { + method: 'POST', + body + }; + try { + await ServerConnection.makeRequest(apiURL, init, settings); + } catch (error: any) { + throw new ServerConnection.NetworkError(error); + } + default: + break; + } + return Promise.resolve(true); +} diff --git a/packages/collaboration-extension/src/index.ts b/packages/collaboration-extension/src/index.ts index 513befa1..4dd13d3e 100644 --- a/packages/collaboration-extension/src/index.ts +++ b/packages/collaboration-extension/src/index.ts @@ -19,7 +19,8 @@ import { menuBarPlugin, rtcGlobalAwarenessPlugin, rtcPanelPlugin, - userEditorCursors + userEditorCursors, + notebookCellExecutor } from './collaboration'; import { sharedLink } from './sharedlink'; @@ -37,7 +38,8 @@ const plugins: JupyterFrontEndPlugin[] = [ rtcGlobalAwarenessPlugin, rtcPanelPlugin, sharedLink, - userEditorCursors + userEditorCursors, + notebookCellExecutor ]; export default plugins; diff --git a/yarn.lock b/yarn.lock index f52db1a8..8f579fc5 100644 --- a/yarn.lock +++ b/yarn.lock @@ -5,561 +5,399 @@ __metadata: version: 6 cacheKey: 8 +"@aashutoshrathi/word-wrap@npm:^1.2.3": + version: 1.2.6 + resolution: "@aashutoshrathi/word-wrap@npm:1.2.6" + checksum: ada901b9e7c680d190f1d012c84217ce0063d8f5c5a7725bb91ec3c5ed99bb7572680eb2d2938a531ccbaec39a95422fcd8a6b4a13110c7d98dd75402f66a0cd + languageName: node + linkType: hard + "@ampproject/remapping@npm:^2.2.0": - version: 2.2.0 - resolution: "@ampproject/remapping@npm:2.2.0" + version: 2.3.0 + resolution: 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"yargs@npm:16.2.0" @@ -13949,8 +15216,8 @@ __metadata: linkType: hard "yargs@npm:^17.3.1, yargs@npm:^17.6.2": - version: 17.7.1 - resolution: "yargs@npm:17.7.1" + version: 17.7.2 + resolution: "yargs@npm:17.7.2" dependencies: cliui: ^8.0.1 escalade: ^3.1.1 @@ -13959,16 +15226,16 @@ __metadata: string-width: ^4.2.3 y18n: ^5.0.5 yargs-parser: ^21.1.1 - checksum: 3d8a43c336a4942bc68080768664aca85c7bd406f018bad362fd255c41c8f4e650277f42fd65d543fce99e084124ddafee7bbfc1a5c6a8fda4cec78609dcf8d4 + checksum: 73b572e863aa4a8cbef323dd911d79d193b772defd5a51aab0aca2d446655216f5002c42c5306033968193bdbf892a7a4c110b0d77954a7fdf563e653967b56a languageName: node linkType: hard "yjs@npm:^13.5.40": - version: 13.6.0 - resolution: "yjs@npm:13.6.0" + version: 13.6.14 + resolution: "yjs@npm:13.6.14" dependencies: - lib0: ^0.2.74 - checksum: 54bd3b0c8a8dc5724044356c8015210f9840b7ac46c8d87d66a0cc5f5bf669298d45324942681ad01ea22c7a4de6a29aa22180d63596e18734bc90335ced982f + lib0: ^0.2.86 + checksum: df399049049820d32d5759a7bd9d70cf30602408ca2a9771324f1b459f703bb6073fb35b5bcde7493fab3721d64e3c1b60eb88415b184e95a73fbce2947741cb languageName: node linkType: hard From 0d722e1faa3b618e8b92ab49d7274457ce387e4f Mon Sep 17 00:00:00 2001 From: David Brochart Date: Mon, 8 Apr 2024 18:01:27 +0200 Subject: [PATCH 02/10] lint --- .../src/collaboration.ts | 29 +++++++++---------- 1 file changed, 14 insertions(+), 15 deletions(-) diff --git a/packages/collaboration-extension/src/collaboration.ts b/packages/collaboration-extension/src/collaboration.ts index a70ef7fb..10935130 100644 --- a/packages/collaboration-extension/src/collaboration.ts +++ b/packages/collaboration-extension/src/collaboration.ts @@ -192,22 +192,20 @@ export const userEditorCursors: JupyterFrontEndPlugin = { } }; -export const notebookCellExecutor: JupyterFrontEndPlugin = { - id: '@jupyter/collaboration-extension:notebook-cell-executor', - description: - 'Add notebook cell executor that uses REST API instead of kernel protocol over WebSocket.', - autoStart: true, - provides: INotebookCellExecutor, - activate: ( - app: JupyterFrontEnd - ): INotebookCellExecutor => { - if (PageConfig.getOption('serverSideExecution') === 'true') { - return Object.freeze({ runCell: runCellServerSide }); +export const notebookCellExecutor: JupyterFrontEndPlugin = + { + id: '@jupyter/collaboration-extension:notebook-cell-executor', + description: + 'Add notebook cell executor that uses REST API instead of kernel protocol over WebSocket.', + autoStart: true, + provides: INotebookCellExecutor, + activate: (app: JupyterFrontEnd): INotebookCellExecutor => { + if (PageConfig.getOption('serverSideExecution') === 'true') { + return Object.freeze({ runCell: runCellServerSide }); + } + return Object.freeze({ runCell }); } - return Object.freeze({ runCell }); - } -}; - + }; async function runCellServerSide({ cell, @@ -246,6 +244,7 @@ async function runCellServerSide({ } catch (error: any) { throw new ServerConnection.NetworkError(error); } + break; default: break; } From 4d9ceccffb799248d3da08540738b7b598673673 Mon Sep 17 00:00:00 2001 From: David Brochart Date: Tue, 9 Apr 2024 09:23:02 +0200 Subject: [PATCH 03/10] again --- packages/collaboration-extension/src/collaboration.ts | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/packages/collaboration-extension/src/collaboration.ts b/packages/collaboration-extension/src/collaboration.ts index 10935130..6fc16d5b 100644 --- a/packages/collaboration-extension/src/collaboration.ts +++ b/packages/collaboration-extension/src/collaboration.ts @@ -223,7 +223,7 @@ async function runCellServerSide({ cell.inputHidden = false; onCellExecuted({ cell, success: true }); break; - case 'code': + case 'code': { const kernelId = sessionContext?.session?.kernel?.id; const settings = ServerConnection.makeSettings(); const apiURL = URLExt.join( @@ -245,6 +245,7 @@ async function runCellServerSide({ throw new ServerConnection.NetworkError(error); } break; + } default: break; } From 161029e801871f529b1a2ab6ece0de5c746f97fe Mon Sep 17 00:00:00 2001 From: David Brochart Date: Tue, 9 Apr 2024 10:08:06 +0200 Subject: [PATCH 04/10] Fix jest --- packages/docprovider/jest.config.js | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/packages/docprovider/jest.config.js b/packages/docprovider/jest.config.js index c74e0e64..a3d68324 100644 --- a/packages/docprovider/jest.config.js +++ b/packages/docprovider/jest.config.js @@ -7,7 +7,11 @@ const jestJupyterLab = require('@jupyterlab/testing/lib/jest-config'); const esModules = [ '@codemirror', + '@microsoft', + 'exenv-es6', '@jupyter/ydoc', + '@jupyter/react-components', + '@jupyter/web-components', '@jupyterlab/', 'lib0', 'nanoid', From 8faaf598e2860207c43151d35c0dd82ee0aae7bf Mon Sep 17 00:00:00 2001 From: David Brochart Date: Tue, 9 Apr 2024 11:08:37 +0200 Subject: [PATCH 05/10] Mention this feature in documentation --- docs/source/configuration.md | 19 ++++++++++++++++++- 1 file changed, 18 insertions(+), 1 deletion(-) diff --git a/docs/source/configuration.md b/docs/source/configuration.md index 6cb1f65c..d0d6591b 100644 --- a/docs/source/configuration.md +++ b/docs/source/configuration.md @@ -10,7 +10,7 @@ you happen to delete it, there shouldn't be any serious consequence either. There are a number of settings that you can change: ```bash -# To enable or disable RTC(Real-Time Collaboration) (default: False). +# To enable or disable RTC (Real-Time Collaboration) (default: False). # If True, RTC will be disabled. jupyter lab --YDocExtension.disable_rtc=True @@ -29,3 +29,20 @@ jupyter lab --YDocExtension.document_cleanup_delay=100 # The YStore class to use for storing Y updates (default: JupyterSQLiteYStore). jupyter lab --YDocExtension.ystore_class=pycrdt_websocket.ystore.TempFileYStore ``` + +There is an experimental feature that is currently only supported by the +[Jupyverse](https://github.com/jupyter-server/jupyverse) server +(not yet with [jupyter-server](https://github.com/jupyter-server/jupyter_server)): +server-side execution. With this, running notebook code cells is not done in the frontend through +the low-level kernel protocol over WebSocket API, but through a high-level REST API. Communication +with the kernel is then delegated to the server, and cell outputs are populated in the notebook +shared document. The frontend gets these outputs changes and shows them live. What this means is +that the notebook state can be fully recovered even if the frontend disconnects, because cell +outputs are not populated frontend-side but server-side. + +This feature is disabled by default, and can be enabled like so: +```bash +pip install "jupyterlab>=4.2.0b0" +pip install "jupyverse[jupyterlab, auth]>=0.4.2" +jupyverse --set kernels.require_yjs=true --set jupyterlab.server_side_execution=true +``` From 6a33bb8385eb095dd12ff77c69a9dc70314b967f Mon Sep 17 00:00:00 2001 From: David Brochart Date: Tue, 9 Apr 2024 15:43:54 +0200 Subject: [PATCH 06/10] Update UI test snapshots --- ...ialization-create-notebook-guest-linux.png | Bin 2316 -> 5370 bytes ...tialization-create-notebook-host-linux.png | Bin 2316 -> 5370 bytes 2 files changed, 0 insertions(+), 0 deletions(-) diff --git a/ui-tests/tests/notebook.spec.ts-snapshots/initialization-create-notebook-guest-linux.png b/ui-tests/tests/notebook.spec.ts-snapshots/initialization-create-notebook-guest-linux.png index 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minimum - - name: Install minimum versions - uses: jupyterlab/maintainer-tools/.github/actions/install-minimums@v1 + - name: Install the Python dependencies + run: | + pip install -e ".[test]" - name: Run the unit tests run: | diff --git a/pyproject.toml b/pyproject.toml index f7b3278e..9133cfd7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,7 +27,7 @@ classifiers = [ "Framework :: Jupyter :: JupyterLab :: Extensions :: Prebuilt", ] dependencies = [ - "jupyter_server>=2.0.0,<3.0.0", + "jupyter_server>=2.4.0,<3.0.0", "jupyter_ydoc>=2.0.0,<3.0.0", "pycrdt-websocket>=0.12.5,<0.13.0", "jupyter_events>=0.10.0", @@ -44,12 +44,12 @@ dev = [ ] test = [ "coverage", - "jupyter_server[test]>=2.0.0", + "jupyter_server[test]>=2.4.0", "jupyter_server_fileid[test]", "pytest>=7.0", "pytest-cov", "websockets", - "importlib_metadata >=3.6; python_version<'3.10'", + "importlib_metadata >=4.8.3; python_version<'3.10'", ] docs = [ "jupyterlab>=4.0.0", From 3aec4df6f234218e82a7c02266b5359ffd20bca2 Mon Sep 17 00:00:00 2001 From: David Brochart Date: Wed, 10 Apr 2024 16:24:07 +0200 Subject: [PATCH 08/10] Add 'serverSideExecution' to page config --- jupyter_collaboration/app.py | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/jupyter_collaboration/app.py b/jupyter_collaboration/app.py index 321d1185..72c327b1 100644 --- a/jupyter_collaboration/app.py +++ b/jupyter_collaboration/app.py @@ -82,7 +82,11 @@ def initialize_settings(self): def initialize_handlers(self): self.serverapp.web_app.settings.setdefault( - "page_config_data", {"disableRTC": self.disable_rtc} + "page_config_data", + { + "disableRTC": self.disable_rtc, + "serverSideExecution": self.server_side_execution, + }, ) # Set configurable parameters to YStore class From 27c708302440c4ea7dd8f8b07a9c5ae4666b04b3 Mon Sep 17 00:00:00 2001 From: David Brochart Date: Thu, 11 Apr 2024 15:00:28 +0200 Subject: [PATCH 09/10] Replace "fully recovered" with "recovered" --- docs/source/configuration.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/source/configuration.md b/docs/source/configuration.md index d0d6591b..ac4f537f 100644 --- a/docs/source/configuration.md +++ b/docs/source/configuration.md @@ -37,8 +37,8 @@ server-side execution. With this, running notebook code cells is not done in the the low-level kernel protocol over WebSocket API, but through a high-level REST API. Communication with the kernel is then delegated to the server, and cell outputs are populated in the notebook shared document. The frontend gets these outputs changes and shows them live. What this means is -that the notebook state can be fully recovered even if the frontend disconnects, because cell -outputs are not populated frontend-side but server-side. +that the notebook state can be recovered even if the frontend disconnects, because cell outputs are +not populated frontend-side but server-side. This feature is disabled by default, and can be enabled like so: ```bash From dfe4256a33e07dbf0295fc34c94b6f54d434250b Mon Sep 17 00:00:00 2001 From: David Brochart Date: Thu, 11 Apr 2024 15:21:34 +0200 Subject: [PATCH 10/10] Add link to jupyter-server issue MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com> --- docs/source/configuration.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/docs/source/configuration.md b/docs/source/configuration.md index ac4f537f..64a32a11 100644 --- a/docs/source/configuration.md +++ b/docs/source/configuration.md @@ -32,7 +32,8 @@ jupyter lab --YDocExtension.ystore_class=pycrdt_websocket.ystore.TempFileYStore There is an experimental feature that is currently only supported by the [Jupyverse](https://github.com/jupyter-server/jupyverse) server -(not yet with [jupyter-server](https://github.com/jupyter-server/jupyter_server)): +(not yet with [jupyter-server](https://github.com/jupyter-server/jupyter_server), +see the [issue #900](https://github.com/jupyter-server/jupyter_server/issues/900)): server-side execution. With this, running notebook code cells is not done in the frontend through the low-level kernel protocol over WebSocket API, but through a high-level REST API. Communication with the kernel is then delegated to the server, and cell outputs are populated in the notebook