.gitignore

### Original OpenFOAM .gitignore with additions for PATO ###

# Editor and misc backup files - anywhere
*~
.*~
*.bak
*.bak[0-9][0-9]
*.orig
*.orig[0-9][0-9]
\#*\#

# python
*.pyc 
src/thirdParty/patoPlot/patoPlot.pyc

# File-browser settings - anywhere
.directory

# CVS recovered versions - anywhere
.#*

# Objects and archives - anywhere
*.[oa]
*.la
*.so

# Derived files
lex.yy.c

# Corefiles
core

# Dependency files - anywhere
*.dep

# lnInclude (symlink) directories - anywhere
lnInclude

# Build directories - anywhere
linux*Clang*/
linux*Gcc*/
linux*Icc*/
solaris*Gcc*/
SunOS*Gcc*/
platforms/

# Reinstate wmake/rules that might look like build directories
!wmake/rules/*/

# doxygen generated documentation
doc/Doxygen/html
doc/Doxygen/latex
doc/Doxygen/man
doc/Doxygen/DTAGS

# Generated files in the main directory (e.g. ReleaseNotes-?.?.html)
# and in the doc directory
/*.html
/doc/*.html

# Untracked configuration files
/etc/prefs.csh
/etc/prefs.sh
/etc/config/prefs.csh
/etc/config/prefs.sh

# Source packages - anywhere
*.tar.bz2
*.tar.gz
*.tar
*.tgz
*.gtgz

# Ignore the persistent .build tag in the main directory
/.build

# Ignore .timeStamp in the main directory
/.timeStamp

# Ignore .tags in the main directory
/.tags

# Ignore eclipse project files in the main directory
/.cproject
/.project

# Ignore the test directories
/tutorialsTest
tutorials/debug

### Additional OpenFOAM files ###

tutorials/*/*/[1-9]*
tutorials/*/*/[0-9]*\.[0-9]*
!tutorials/*/*/0/*
!tutorials/**/[0-9]D*
#tutorials/*/*/output/*
tutorials/*/*/processor[0-9]*

**/postProcessing/*
**/plots/profiles/*
**/plots/*.pdf
*.OpenFOAM
*.blockMesh

# debug
tutorials/debug/*

### LaTeX ###

*.acn
*.acr
*.alg
*.aux
*.bbl
*.blg
*.dvi
*.fdb_latexmk
*.fls
*.glg
*.glo
*.gls
*.idx
*.ilg
*.ind
*.ist
*.lof
*.log
*.lot
*.maf
*.mtc
*.mtc0
*.nav
*.nlo
*.out
*.pdfsync
*.ps
*.snm
*.synctex.gz
*.toc
*.vrb
*.xdy
*.tdo
documentation/PATO_UserGuide/PATO_UserGuide.pdf

### Sublime Text ###
# Cache files
*.tmlanguage.cache
*.tmPreferences.cache
*.stTheme.cache

# Workspace files are user-specific
*.sublime-workspace

### IDE (Eclipse, netbeans, CLion, qtCreator, etc.) ###
nbproject
.idea
.project
.cproject
*.creator.user
*.creator
*.config
*.files
*.includes
*.cflags
*.cxxflags
*.dir-locals.el
*.kdev4

### Other protections ###
.svn
.~lock*
log_log.dat
*.aux
*.log

# PATO install system files
install

# Mutation build system files
src/thirdParty/mutation++/mutation++/build
src/thirdParty/mutation++/mutation++/install
src/thirdParty/mutation++/run

# Documentation
documentation/Doxygen/DTAGS
documentation/Doxygen/html

# MACOS
darwin64Clang*
*.DS_Store

# GNU tags files
GPATH
GRTAGS
GTAGS
TAGS