diff --git a/.DS_Store b/.DS_Store new file mode 100644 index 0000000..fcf0211 Binary files /dev/null and b/.DS_Store differ diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000..dfe0770 --- /dev/null +++ b/.gitattributes @@ -0,0 +1,2 @@ +# Auto detect text files and perform LF normalization +* text=auto diff --git a/.idea/.gitignore b/.idea/.gitignore new file mode 100644 index 0000000..13566b8 --- /dev/null +++ b/.idea/.gitignore @@ -0,0 +1,8 @@ +# Default ignored files +/shelf/ +/workspace.xml +# Editor-based HTTP Client requests +/httpRequests/ +# Datasource local storage ignored files +/dataSources/ +/dataSources.local.xml diff --git a/.idea/bioinfor_tools.iml b/.idea/bioinfor_tools.iml new file mode 100644 index 0000000..d0876a7 --- /dev/null +++ b/.idea/bioinfor_tools.iml @@ -0,0 +1,8 @@ + + + + + + + + \ No newline at end of file diff --git a/.idea/inspectionProfiles/Project_Default.xml b/.idea/inspectionProfiles/Project_Default.xml new file mode 100644 index 0000000..4e6a219 --- /dev/null +++ b/.idea/inspectionProfiles/Project_Default.xml @@ -0,0 +1,36 @@ + + + + \ No newline at end of file diff --git a/.idea/inspectionProfiles/profiles_settings.xml b/.idea/inspectionProfiles/profiles_settings.xml new file mode 100644 index 0000000..105ce2d --- /dev/null +++ b/.idea/inspectionProfiles/profiles_settings.xml @@ -0,0 +1,6 @@ + + + + \ No newline at end of file diff --git a/.idea/misc.xml b/.idea/misc.xml new file mode 100644 index 0000000..d56657a --- /dev/null +++ b/.idea/misc.xml @@ -0,0 +1,4 @@ + + + + \ No newline at end of file diff --git a/.idea/modules.xml b/.idea/modules.xml new file mode 100644 index 0000000..4851e72 --- /dev/null +++ b/.idea/modules.xml @@ -0,0 +1,8 @@ + + + + + + + + \ No newline at end of file diff --git a/README.md b/README.md new file mode 100644 index 0000000..b71352e --- /dev/null +++ b/README.md @@ -0,0 +1,2 @@ +# bioinfor_tools + diff --git a/bioinfor_tools.egg-info/PKG-INFO b/bioinfor_tools.egg-info/PKG-INFO new file mode 100644 index 0000000..e3954ea --- /dev/null +++ b/bioinfor_tools.egg-info/PKG-INFO @@ -0,0 +1,12 @@ +Metadata-Version: 2.1 +Name: bioinfor-tools +Version: 0.1 +Summary: UNKNOWN +Home-page: UNKNOWN +Author: jmzhang +Author-email: jmzhang1911@gmail.com +License: UNKNOWN +Platform: UNKNOWN + +UNKNOWN + diff --git a/bioinfor_tools.egg-info/SOURCES.txt b/bioinfor_tools.egg-info/SOURCES.txt new file mode 100644 index 0000000..a3995f2 --- /dev/null +++ b/bioinfor_tools.egg-info/SOURCES.txt @@ -0,0 +1,9 @@ +setup.py +bioinfor_tools/__init__.py +bioinfor_tools/_bio_basic.py +bioinfor_tools/_cmd_runner.py +bioinfor_tools/_utils.py +bioinfor_tools.egg-info/PKG-INFO +bioinfor_tools.egg-info/SOURCES.txt +bioinfor_tools.egg-info/dependency_links.txt +bioinfor_tools.egg-info/top_level.txt \ No newline at end of file diff --git a/bioinfor_tools.egg-info/dependency_links.txt b/bioinfor_tools.egg-info/dependency_links.txt new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/bioinfor_tools.egg-info/dependency_links.txt @@ -0,0 +1 @@ + diff --git a/bioinfor_tools.egg-info/top_level.txt b/bioinfor_tools.egg-info/top_level.txt new file mode 100644 index 0000000..b728b9c --- /dev/null +++ b/bioinfor_tools.egg-info/top_level.txt @@ -0,0 +1 @@ +bioinfor_tools diff --git a/bioinfor_tools/__init__.py b/bioinfor_tools/__init__.py new file mode 100644 index 0000000..620c813 --- /dev/null +++ b/bioinfor_tools/__init__.py @@ -0,0 +1,19 @@ +#!/share/nas2/genome/biosoft/Python//3.7.3/bin/python3 +# -*- coding: utf-8 -*- +# @Time : 2023/4/28 09:13 +# @Author : jmzhang +# @Email : jmzhang1911@gmail.com + +import logging + +FORMAT = '%(asctime)s %(message)s' +logging.basicConfig(level=logging.INFO, format=FORMAT, datefmt='%Y-%m-%d %H:%M:%S') + +__version__ = 'v0.1 beta' + +from ._bio_basic import BioBasic +from ._cmd_runner import CmdRunner as __CmdRunner +from ._utils import * + +cmd_wrapper = __CmdRunner.cmd_wrapper +cmd = __CmdRunner.cmd diff --git a/bioinfor_tools/__pycache__/__init__.cpython-39.pyc b/bioinfor_tools/__pycache__/__init__.cpython-39.pyc new file mode 100644 index 0000000..2ad1ad1 Binary files /dev/null and b/bioinfor_tools/__pycache__/__init__.cpython-39.pyc differ diff --git a/bioinfor_tools/__pycache__/_bio_basic.cpython-39.pyc b/bioinfor_tools/__pycache__/_bio_basic.cpython-39.pyc new file mode 100644 index 0000000..5633aa6 Binary files /dev/null and b/bioinfor_tools/__pycache__/_bio_basic.cpython-39.pyc differ diff --git a/bioinfor_tools/__pycache__/_cmd_runner.cpython-39.pyc b/bioinfor_tools/__pycache__/_cmd_runner.cpython-39.pyc new file mode 100644 index 0000000..a3c6d74 Binary files /dev/null and b/bioinfor_tools/__pycache__/_cmd_runner.cpython-39.pyc differ diff --git a/bioinfor_tools/__pycache__/_utils.cpython-39.pyc b/bioinfor_tools/__pycache__/_utils.cpython-39.pyc new file mode 100644 index 0000000..9d372ee Binary files /dev/null and b/bioinfor_tools/__pycache__/_utils.cpython-39.pyc differ diff --git a/bioinfor_tools/_bio_basic.py b/bioinfor_tools/_bio_basic.py new file mode 100644 index 0000000..228353a --- /dev/null +++ b/bioinfor_tools/_bio_basic.py @@ -0,0 +1,20 @@ +from pathlib import Path + + +class BioBasic: + """ + - basic functions and property + - read cfg + - mkdir dir + - module property + """ + # 主路径位置 + BASE_DIR = Path(__file__).absolute().parent.parent + # 日志路径 + LOGGING_SUMMARY = BASE_DIR / 'logging_summary.txt' + + def __init__(self, module): + # 模块所在的绝对父目录 + self._module_dir = Path(module).absolute().parent + # 模块的名称 + self._module_name = Path(module).name diff --git a/bioinfor_tools/_cmd_runner.py b/bioinfor_tools/_cmd_runner.py new file mode 100644 index 0000000..b52c475 --- /dev/null +++ b/bioinfor_tools/_cmd_runner.py @@ -0,0 +1,289 @@ +from concurrent.futures import ThreadPoolExecutor, wait, FIRST_EXCEPTION +import bioinfor_tools._utils as _utils +from ._bio_basic import BioBasic +from threading import Event +from pathlib import Path +import subprocess +import functools +import datetime +import getpass +import logging +import inspect +import time + + +class CmdRunner(BioBasic): + """ + 1) basic + Note: cmd_container: ([cmd1, cmd2, *], *) or [cmd1, cmd2, *] + There are two ways to do it: + - @CmdRunner.cmd_wrapper(): the wrapper-ed function must return a cmd_container + - CmdRunner.runner(cmd_container): just use it as a function + + example 01: + + @CmdRunner.cmd_wrapper() + def hello_world(): + cmd_list = ['sleep 5 && echo done' for _ in range(5)] + return cmd_list + + example 02: + CmdRunner.runner(['echo hello world']) + + 2) Using PBS: add parameter use_qsub=True + 3) outputs: + - cmds_sh: + - func_name-time.sh # contains cmds + - cmds_qsub: + - func_name-time + - cmd_1.pbs # pbs script + - cmd_1.xxx # means failure + - cmd_1.output # standard output + - cmd_1.error # standard error output + - cmd_1.done # means success + """ + + user_name = getpass.getuser() + qsub_nodes = 'hpc12-l-0-0' + + # qsub的一些属性 + _qsub_host = 'ssh {}@{} "cd {} && '.format(user_name, qsub_nodes, Path().absolute()) + _qsub_re_submit_times = 2 # 重投次数 + _qsub_check_time = 60 # 多久检查一次任务执行状况，单位：秒 + + subprocess_list = [] + + @staticmethod + def _resolve_cmd(cmd_container): + """ + 解析cmd -> ([cmd1, cmd2, *], *) or [cmd1, cmd2, *] + """ + if not cmd_container: + raise 'None cmd, shut down!!!' + + if isinstance(cmd_container, list): + return cmd_container, None + + elif isinstance(cmd_container, tuple) and isinstance(cmd_container[0], list): + return cmd_container[0], cmd_container[1:] + + else: + raise Exception('please input ([cmd1, cmd2, *], *) or [cmd1, cmd2, *]') + + @classmethod + def _run_shell(cls, cmd, use_qsub: bool, event, file_exist_for_skipping=''): + """ + - 执行命令，可选普通shell模式或qsub模式 + - qsub模式，通过qstat判断任务是否正在进行，运行完成后判断是否touch.done，若失败会重新运行三次 + """ + if not use_qsub: + logging.info('-> running {}'.format(cmd)) + + if event.is_set(): + logging.info('Stopping, {}'.format(cmd)) + return + + p = subprocess.Popen(cmd, shell=True) + cls.subprocess_list.append(p) + # while True: + # if event.is_set(): + # logging.info('Stopping, {}'.format(cmd)) + # p.terminate() + + ret = p.wait() + + if ret != 0: + error_info = '-> `{}` failed:\n{}'.format(cmd, ret) + raise Exception(error_info) + + else: + cmd_qsub, touch_done, cmd_shell = cmd + num = 1 + + while num <= cls._qsub_re_submit_times: + logging.info('-> qsub is running {}'.format(cmd_shell)) + p = subprocess.Popen(cmd_qsub, shell=True, stdout=subprocess.PIPE) + p.wait() + job_number = p.stdout.read().decode().split()[2] + + while True: + time.sleep(cls._qsub_check_time) + p1 = subprocess.Popen('qstat', shell=True, stdout=subprocess.PIPE) + msg = p1.stdout.read().decode() + + if job_number not in [_.split()[0] for _ in msg.split('\n')[2:-1]]: + + if Path(touch_done.replace('&& touch ', '')).exists(): + num = 666 + logging.info('cmd={} done! Good for U'.format(cmd_shell)) + break + else: + num += 1 + logging.info('cmd={} shut down!!!trying {} times ...'.format(cmd_shell, num)) + if num > cls._qsub_re_submit_times: + with open(cmd_shell + '.xxx', 'w') as f: + f.write('sorry for you, {}!!!\n'.format(cls.user_name)) + raise Exception('cmd={} failed!!!tried {} times ...'.format(cmd_shell, num)) + + @classmethod + def cmd(cls, cmd_container, n_jobs: int = '', fn_name='', module_name='', use_qsub=False, nodes=1, ppn=1): + + logging.info( + '>-- Dear {}, {}.{} is ready to go. Godspeed!!! --<'.format(cls.user_name, module_name, fn_name)) + # 解析出cmd_list，函数的返回值等 + cmd_list, return_value = cls._resolve_cmd(cmd_container) + + n_jobs = int(n_jobs) if n_jobs else len(cmd_list) + now = str(datetime.datetime.now().replace(microsecond=0)).replace(' ', '_').replace(':', '-') + + if not use_qsub: + if fn_name: + _utils.mkdir('cmds_sh') + cmd_file = 'cmds_sh/{}_{}.sh'.format(fn_name, now) + + with open(cmd_file, 'w') as f: + for cmd in cmd_list: + f.write(cmd + '\n') + else: + fn_name = fn_name if fn_name else 'tmp_qsub_cmd' + fn_path = 'cmds_qsub/{}_{}'.format(fn_name, now) + _utils.mkdir(fn_path) + cmd_qsub_list = [] + + for num, cmd in enumerate(cmd_list, start=1): + cmd_shell = '{}/{}_{}.pbs'.format(fn_path, fn_name, num) + cmd_shell_o = cmd_shell + '.output' + cmd_shell_e = cmd_shell + '.error' + + with open(cmd_shell, 'w') as f: + touch_done = '&& touch {}.done'.format(cmd_shell) + cmd += touch_done + f.write('#PBS -l nodes={}:ppn={}\n{}\n'.format(nodes, ppn, cmd)) + + # 解决在计算节点投递任务的情况 + + cmd_qsub = '{} qsub -V -cwd -o {} -e {} {} "'. \ + format(cls._qsub_host, + cmd_shell_o, + cmd_shell_e, + cmd_shell) + cmd_qsub_list.append((cmd_qsub, touch_done, cmd_shell)) + + cmd_list = cmd_qsub_list + + with ThreadPoolExecutor(max_workers=n_jobs) as executor_cmd: + event = Event() + run_shell = functools.partial(cls._run_shell, use_qsub=use_qsub, event=event) + + # task_list = [] + # for cmd in cmd_list: + # task = executor_cmd.submit(run_shell, cmd) + # task_list.append(task) + futures = [executor_cmd.submit(run_shell, cmd) for cmd in cmd_list] + + if len(futures) >1: + + done, not_done = wait(futures, return_when=FIRST_EXCEPTION) + if len(done) == 1 or len(done) != len(futures): + future = list(done)[0] + logging.info(future.exception()) + error_info = f'One task failed with: {future.exception()}, shutting down' + for future in futures: + future.cancel() + + event.set() + raise Exception(error_info) + + # while True: + # logging.info(cls.ERROR_LIST) + # if len(cls.ERROR_LIST) >= 1: + # executor_cmd.shutdown(wait=False) + + # for future in as_completed(task_list): + # future.result() + + # try: + # wait(task_list) + # except ValueError: + # print("An error occurs in one of the threads, terminating all threads") + # executor_cmd.shutdown(wait=False) # 立即关闭线程 + + return return_value + + # def __call__(self, n_jobs: int = '', *args, use_qsub=False, **kwargs): + # start = datetime.datetime.now() + # cmd_container = self._resolve_cmd(self.fn(*args, **kwargs)) + # return_value = self.cmd(cmd_container=cmd_container, + # n_jobs=n_jobs, + # use_qsub=use_qsub, + # fn_name=self.fn.__name__, + # module_name=self.fn.__module__) + # + # delta = (datetime.datetime.now() - start).total_seconds() + # logging.info('%%%%-- {}.{} took {:.1} min --%%%%'.format(self.fn.__module__, self.fn.__name__, delta / 60)) + # return return_value + + @classmethod + def cmd_wrapper(cls, n_jobs: int = '', use_qsub=False, nodes=1, ppn=1): + + def wrapper(fn): + @functools.wraps(fn) + def __wrapper(*args, **kwargs): + start = datetime.datetime.now() + cmd_container = cls._resolve_cmd(fn(*args, **kwargs)) + return_value = cls.cmd(cmd_container=cmd_container, + n_jobs=n_jobs, + use_qsub=use_qsub, + fn_name=fn.__name__, + module_name=inspect.getsourcefile(fn), + nodes=nodes, ppn=ppn) + + delta = (datetime.datetime.now() - start).total_seconds() + logging.info( + '%%%%-- {}.{} took {:.2f} min --%%%%'.format(inspect.getsourcefile(fn), fn.__name__, delta / 60)) + + return return_value + + return __wrapper + + return wrapper + + +if __name__ == '__main__': + # @CmdRunner.cmd_wrapper() + # def foo(a=10): + # cmd_list = ['sleep 3 && echo done!' for _ in range(20)] + # return cmd_list, a + # + # + # import random + # + # + # @CmdRunner.cmd_wrapper(use_qsub=True, n_jobs=5) + # def foo2(a='hello'): + # cmd_list = ['sleep {} && echo done!'.format(random.randint(15, 30)) for _ in range(10)] + # cmd_list.append('xxxxx ') + # return cmd_list, a + # + # + # @CmdRunner.cmd_wrapper(use_qsub=True) + # def hello_world(a='hello'): + # cmd_list = ['sleep {} && echo done!'.format(random.randint(15, 30)) for _ in range(10)] + # cmd_list.append('xxxxx ') + # return cmd_list, a + # + # # @CmdRunner(n_jobs=1) # mdRunner() + # # def hello_world2(a='hello'): + # # cmd_list = ['sleep {} && echo done!'.format(random.randint(15, 30)) for _ in range(10)] + # # cmd_list.append('xxxxx ') + # # return cmd_list, a + + @CmdRunner.cmd_wrapper(n_jobs=1) + def hello(): + + cmd_list = [] + for i in range(5): + cmd = 'echo hello && sleep {}'.format(i) + cmd_list.append(cmd) + + return cmd_list diff --git a/bioinfor_tools/_utils.py b/bioinfor_tools/_utils.py new file mode 100644 index 0000000..170e962 --- /dev/null +++ b/bioinfor_tools/_utils.py @@ -0,0 +1,45 @@ +#!/share/nas2/genome/biosoft/Python//3.7.3/bin/python3 +# -*- coding: utf-8 -*- +# @Time : 2023/4/28 13:31 +# @Author : jmzhang +# @Email : jmzhang1911@gmail.com +from pathlib import Path +import datetime + + +def mkdir(*path: str): + """mkdir recursive-dir""" + for p in list(path): + if not Path(p).exists(): + Path(p).mkdir(parents=True, exist_ok=True) + + +def read_cfg(config): + with open(config, 'r', encoding='utf-8') as f: + config_dict = {} + for line in f: + if line.strip().startswith('#') or line.strip() == '': + continue + k, v = line.strip().split() + config_dict[k] = str(v).strip() + return config_dict + + +def read_yaml(yaml_file): + import yaml + with open(yaml_file, 'r') as f: + yaml_dict = yaml.safe_load(f) + + return yaml_dict + + +def make_summary(script_path, status='doing'): + logging_summary = Path(__file__).parent / 'logging_summary.txt' + try: + with open(logging_summary, 'a') as f: + info_log = 'datetime:{}\tpwd:{}\tscript_id:{}\tstatus:{}\n'. \ + format(datetime.datetime.now().replace(microsecond=0), Path().absolute(), Path(script_path).name, + status) + f.write(info_log) + except PermissionError: + pass diff --git a/bioinfor_tools/logging_summary.txt b/bioinfor_tools/logging_summary.txt new file mode 100644 index 0000000..a8d5e79 --- /dev/null +++ b/bioinfor_tools/logging_summary.txt @@ -0,0 +1,17 @@ +datetime:2023-04-28 09:45:35 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 09:49:37 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 09:51:41 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 09:52:55 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 10:04:36 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 10:05:37 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 10:18:51 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 10:22:14 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 10:32:22 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 10:32:46 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 10:36:21 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 10:39:08 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 10:39:22 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 10:39:52 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 10:41:41 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 10:41:46 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done +datetime:2023-04-28 10:42:09 pwd:/Users/jmzhang/workspace/mygithub/bioinfor_tools script_id:test.py status:done diff --git a/build/lib/bioinfor_tools/__init__.py b/build/lib/bioinfor_tools/__init__.py new file mode 100644 index 0000000..620c813 --- /dev/null +++ b/build/lib/bioinfor_tools/__init__.py @@ -0,0 +1,19 @@ +#!/share/nas2/genome/biosoft/Python//3.7.3/bin/python3 +# -*- coding: utf-8 -*- +# @Time : 2023/4/28 09:13 +# @Author : jmzhang +# @Email : jmzhang1911@gmail.com + +import logging + +FORMAT = '%(asctime)s %(message)s' +logging.basicConfig(level=logging.INFO, format=FORMAT, datefmt='%Y-%m-%d %H:%M:%S') + +__version__ = 'v0.1 beta' + +from ._bio_basic import BioBasic +from ._cmd_runner import CmdRunner as __CmdRunner +from ._utils import * + +cmd_wrapper = __CmdRunner.cmd_wrapper +cmd = __CmdRunner.cmd diff --git a/build/lib/bioinfor_tools/_bio_basic.py b/build/lib/bioinfor_tools/_bio_basic.py new file mode 100644 index 0000000..228353a --- /dev/null +++ b/build/lib/bioinfor_tools/_bio_basic.py @@ -0,0 +1,20 @@ +from pathlib import Path + + +class BioBasic: + """ + - basic functions and property + - read cfg + - mkdir dir + - module property + """ + # 主路径位置 + BASE_DIR = Path(__file__).absolute().parent.parent + # 日志路径 + LOGGING_SUMMARY = BASE_DIR / 'logging_summary.txt' + + def __init__(self, module): + # 模块所在的绝对父目录 + self._module_dir = Path(module).absolute().parent + # 模块的名称 + self._module_name = Path(module).name diff --git a/build/lib/bioinfor_tools/_cmd_runner.py b/build/lib/bioinfor_tools/_cmd_runner.py new file mode 100644 index 0000000..b52c475 --- /dev/null +++ b/build/lib/bioinfor_tools/_cmd_runner.py @@ -0,0 +1,289 @@ +from concurrent.futures import ThreadPoolExecutor, wait, FIRST_EXCEPTION +import bioinfor_tools._utils as _utils +from ._bio_basic import BioBasic +from threading import Event +from pathlib import Path +import subprocess +import functools +import datetime +import getpass +import logging +import inspect +import time + + +class CmdRunner(BioBasic): + """ + 1) basic + Note: cmd_container: ([cmd1, cmd2, *], *) or [cmd1, cmd2, *] + There are two ways to do it: + - @CmdRunner.cmd_wrapper(): the wrapper-ed function must return a cmd_container + - CmdRunner.runner(cmd_container): just use it as a function + + example 01: + + @CmdRunner.cmd_wrapper() + def hello_world(): + cmd_list = ['sleep 5 && echo done' for _ in range(5)] + return cmd_list + + example 02: + CmdRunner.runner(['echo hello world']) + + 2) Using PBS: add parameter use_qsub=True + 3) outputs: + - cmds_sh: + - func_name-time.sh # contains cmds + - cmds_qsub: + - func_name-time + - cmd_1.pbs # pbs script + - cmd_1.xxx # means failure + - cmd_1.output # standard output + - cmd_1.error # standard error output + - cmd_1.done # means success + """ + + user_name = getpass.getuser() + qsub_nodes = 'hpc12-l-0-0' + + # qsub的一些属性 + _qsub_host = 'ssh {}@{} "cd {} && '.format(user_name, qsub_nodes, Path().absolute()) + _qsub_re_submit_times = 2 # 重投次数 + _qsub_check_time = 60 # 多久检查一次任务执行状况，单位：秒 + + subprocess_list = [] + + @staticmethod + def _resolve_cmd(cmd_container): + """ + 解析cmd -> ([cmd1, cmd2, *], *) or [cmd1, cmd2, *] + """ + if not cmd_container: + raise 'None cmd, shut down!!!' + + if isinstance(cmd_container, list): + return cmd_container, None + + elif isinstance(cmd_container, tuple) and isinstance(cmd_container[0], list): + return cmd_container[0], cmd_container[1:] + + else: + raise Exception('please input ([cmd1, cmd2, *], *) or [cmd1, cmd2, *]') + + @classmethod + def _run_shell(cls, cmd, use_qsub: bool, event, file_exist_for_skipping=''): + """ + - 执行命令，可选普通shell模式或qsub模式 + - qsub模式，通过qstat判断任务是否正在进行，运行完成后判断是否touch.done，若失败会重新运行三次 + """ + if not use_qsub: + logging.info('-> running {}'.format(cmd)) + + if event.is_set(): + logging.info('Stopping, {}'.format(cmd)) + return + + p = subprocess.Popen(cmd, shell=True) + cls.subprocess_list.append(p) + # while True: + # if event.is_set(): + # logging.info('Stopping, {}'.format(cmd)) + # p.terminate() + + ret = p.wait() + + if ret != 0: + error_info = '-> `{}` failed:\n{}'.format(cmd, ret) + raise Exception(error_info) + + else: + cmd_qsub, touch_done, cmd_shell = cmd + num = 1 + + while num <= cls._qsub_re_submit_times: + logging.info('-> qsub is running {}'.format(cmd_shell)) + p = subprocess.Popen(cmd_qsub, shell=True, stdout=subprocess.PIPE) + p.wait() + job_number = p.stdout.read().decode().split()[2] + + while True: + time.sleep(cls._qsub_check_time) + p1 = subprocess.Popen('qstat', shell=True, stdout=subprocess.PIPE) + msg = p1.stdout.read().decode() + + if job_number not in [_.split()[0] for _ in msg.split('\n')[2:-1]]: + + if Path(touch_done.replace('&& touch ', '')).exists(): + num = 666 + logging.info('cmd={} done! Good for U'.format(cmd_shell)) + break + else: + num += 1 + logging.info('cmd={} shut down!!!trying {} times ...'.format(cmd_shell, num)) + if num > cls._qsub_re_submit_times: + with open(cmd_shell + '.xxx', 'w') as f: + f.write('sorry for you, {}!!!\n'.format(cls.user_name)) + raise Exception('cmd={} failed!!!tried {} times ...'.format(cmd_shell, num)) + + @classmethod + def cmd(cls, cmd_container, n_jobs: int = '', fn_name='', module_name='', use_qsub=False, nodes=1, ppn=1): + + logging.info( + '>-- Dear {}, {}.{} is ready to go. Godspeed!!! --<'.format(cls.user_name, module_name, fn_name)) + # 解析出cmd_list，函数的返回值等 + cmd_list, return_value = cls._resolve_cmd(cmd_container) + + n_jobs = int(n_jobs) if n_jobs else len(cmd_list) + now = str(datetime.datetime.now().replace(microsecond=0)).replace(' ', '_').replace(':', '-') + + if not use_qsub: + if fn_name: + _utils.mkdir('cmds_sh') + cmd_file = 'cmds_sh/{}_{}.sh'.format(fn_name, now) + + with open(cmd_file, 'w') as f: + for cmd in cmd_list: + f.write(cmd + '\n') + else: + fn_name = fn_name if fn_name else 'tmp_qsub_cmd' + fn_path = 'cmds_qsub/{}_{}'.format(fn_name, now) + _utils.mkdir(fn_path) + cmd_qsub_list = [] + + for num, cmd in enumerate(cmd_list, start=1): + cmd_shell = '{}/{}_{}.pbs'.format(fn_path, fn_name, num) + cmd_shell_o = cmd_shell + '.output' + cmd_shell_e = cmd_shell + '.error' + + with open(cmd_shell, 'w') as f: + touch_done = '&& touch {}.done'.format(cmd_shell) + cmd += touch_done + f.write('#PBS -l nodes={}:ppn={}\n{}\n'.format(nodes, ppn, cmd)) + + # 解决在计算节点投递任务的情况 + + cmd_qsub = '{} qsub -V -cwd -o {} -e {} {} "'. \ + format(cls._qsub_host, + cmd_shell_o, + cmd_shell_e, + cmd_shell) + cmd_qsub_list.append((cmd_qsub, touch_done, cmd_shell)) + + cmd_list = cmd_qsub_list + + with ThreadPoolExecutor(max_workers=n_jobs) as executor_cmd: + event = Event() + run_shell = functools.partial(cls._run_shell, use_qsub=use_qsub, event=event) + + # task_list = [] + # for cmd in cmd_list: + # task = executor_cmd.submit(run_shell, cmd) + # task_list.append(task) + futures = [executor_cmd.submit(run_shell, cmd) for cmd in cmd_list] + + if len(futures) >1: + + done, not_done = wait(futures, return_when=FIRST_EXCEPTION) + if len(done) == 1 or len(done) != len(futures): + future = list(done)[0] + logging.info(future.exception()) + error_info = f'One task failed with: {future.exception()}, shutting down' + for future in futures: + future.cancel() + + event.set() + raise Exception(error_info) + + # while True: + # logging.info(cls.ERROR_LIST) + # if len(cls.ERROR_LIST) >= 1: + # executor_cmd.shutdown(wait=False) + + # for future in as_completed(task_list): + # future.result() + + # try: + # wait(task_list) + # except ValueError: + # print("An error occurs in one of the threads, terminating all threads") + # executor_cmd.shutdown(wait=False) # 立即关闭线程 + + return return_value + + # def __call__(self, n_jobs: int = '', *args, use_qsub=False, **kwargs): + # start = datetime.datetime.now() + # cmd_container = self._resolve_cmd(self.fn(*args, **kwargs)) + # return_value = self.cmd(cmd_container=cmd_container, + # n_jobs=n_jobs, + # use_qsub=use_qsub, + # fn_name=self.fn.__name__, + # module_name=self.fn.__module__) + # + # delta = (datetime.datetime.now() - start).total_seconds() + # logging.info('%%%%-- {}.{} took {:.1} min --%%%%'.format(self.fn.__module__, self.fn.__name__, delta / 60)) + # return return_value + + @classmethod + def cmd_wrapper(cls, n_jobs: int = '', use_qsub=False, nodes=1, ppn=1): + + def wrapper(fn): + @functools.wraps(fn) + def __wrapper(*args, **kwargs): + start = datetime.datetime.now() + cmd_container = cls._resolve_cmd(fn(*args, **kwargs)) + return_value = cls.cmd(cmd_container=cmd_container, + n_jobs=n_jobs, + use_qsub=use_qsub, + fn_name=fn.__name__, + module_name=inspect.getsourcefile(fn), + nodes=nodes, ppn=ppn) + + delta = (datetime.datetime.now() - start).total_seconds() + logging.info( + '%%%%-- {}.{} took {:.2f} min --%%%%'.format(inspect.getsourcefile(fn), fn.__name__, delta / 60)) + + return return_value + + return __wrapper + + return wrapper + + +if __name__ == '__main__': + # @CmdRunner.cmd_wrapper() + # def foo(a=10): + # cmd_list = ['sleep 3 && echo done!' for _ in range(20)] + # return cmd_list, a + # + # + # import random + # + # + # @CmdRunner.cmd_wrapper(use_qsub=True, n_jobs=5) + # def foo2(a='hello'): + # cmd_list = ['sleep {} && echo done!'.format(random.randint(15, 30)) for _ in range(10)] + # cmd_list.append('xxxxx ') + # return cmd_list, a + # + # + # @CmdRunner.cmd_wrapper(use_qsub=True) + # def hello_world(a='hello'): + # cmd_list = ['sleep {} && echo done!'.format(random.randint(15, 30)) for _ in range(10)] + # cmd_list.append('xxxxx ') + # return cmd_list, a + # + # # @CmdRunner(n_jobs=1) # mdRunner() + # # def hello_world2(a='hello'): + # # cmd_list = ['sleep {} && echo done!'.format(random.randint(15, 30)) for _ in range(10)] + # # cmd_list.append('xxxxx ') + # # return cmd_list, a + + @CmdRunner.cmd_wrapper(n_jobs=1) + def hello(): + + cmd_list = [] + for i in range(5): + cmd = 'echo hello && sleep {}'.format(i) + cmd_list.append(cmd) + + return cmd_list diff --git a/build/lib/bioinfor_tools/_utils.py b/build/lib/bioinfor_tools/_utils.py new file mode 100644 index 0000000..170e962 --- /dev/null +++ b/build/lib/bioinfor_tools/_utils.py @@ -0,0 +1,45 @@ +#!/share/nas2/genome/biosoft/Python//3.7.3/bin/python3 +# -*- coding: utf-8 -*- +# @Time : 2023/4/28 13:31 +# @Author : jmzhang +# @Email : jmzhang1911@gmail.com +from pathlib import Path +import datetime + + +def mkdir(*path: str): + """mkdir recursive-dir""" + for p in list(path): + if not Path(p).exists(): + Path(p).mkdir(parents=True, exist_ok=True) + + +def read_cfg(config): + with open(config, 'r', encoding='utf-8') as f: + config_dict = {} + for line in f: + if line.strip().startswith('#') or line.strip() == '': + continue + k, v = line.strip().split() + config_dict[k] = str(v).strip() + return config_dict + + +def read_yaml(yaml_file): + import yaml + with open(yaml_file, 'r') as f: + yaml_dict = yaml.safe_load(f) + + return yaml_dict + + +def make_summary(script_path, status='doing'): + logging_summary = Path(__file__).parent / 'logging_summary.txt' + try: + with open(logging_summary, 'a') as f: + info_log = 'datetime:{}\tpwd:{}\tscript_id:{}\tstatus:{}\n'. \ + format(datetime.datetime.now().replace(microsecond=0), Path().absolute(), Path(script_path).name, + status) + f.write(info_log) + except PermissionError: + pass diff --git a/cmds_sh/foo_2023-04-28_09-29-49.sh b/cmds_sh/foo_2023-04-28_09-29-49.sh new file mode 100644 index 0000000..4f73a9a --- /dev/null +++ b/cmds_sh/foo_2023-04-28_09-29-49.sh @@ -0,0 +1,5 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_09-29-58.sh b/cmds_sh/foo_2023-04-28_09-29-58.sh new file mode 100644 index 0000000..4f73a9a --- /dev/null +++ b/cmds_sh/foo_2023-04-28_09-29-58.sh @@ -0,0 +1,5 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_09-31-29.sh b/cmds_sh/foo_2023-04-28_09-31-29.sh new file mode 100644 index 0000000..4f73a9a --- /dev/null +++ b/cmds_sh/foo_2023-04-28_09-31-29.sh @@ -0,0 +1,5 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_09-41-01.sh b/cmds_sh/foo_2023-04-28_09-41-01.sh new file mode 100644 index 0000000..4f73a9a --- /dev/null +++ b/cmds_sh/foo_2023-04-28_09-41-01.sh @@ -0,0 +1,5 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_09-43-54.sh b/cmds_sh/foo_2023-04-28_09-43-54.sh new file mode 100644 index 0000000..4f73a9a --- /dev/null +++ b/cmds_sh/foo_2023-04-28_09-43-54.sh @@ -0,0 +1,5 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_09-45-00.sh b/cmds_sh/foo_2023-04-28_09-45-00.sh new file mode 100644 index 0000000..4f73a9a --- /dev/null +++ b/cmds_sh/foo_2023-04-28_09-45-00.sh @@ -0,0 +1,5 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_09-45-29.sh b/cmds_sh/foo_2023-04-28_09-45-29.sh new file mode 100644 index 0000000..4f73a9a --- /dev/null +++ b/cmds_sh/foo_2023-04-28_09-45-29.sh @@ -0,0 +1,5 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_09-49-31.sh b/cmds_sh/foo_2023-04-28_09-49-31.sh new file mode 100644 index 0000000..4f73a9a --- /dev/null +++ b/cmds_sh/foo_2023-04-28_09-49-31.sh @@ -0,0 +1,5 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_09-51-35.sh b/cmds_sh/foo_2023-04-28_09-51-35.sh new file mode 100644 index 0000000..4f73a9a --- /dev/null +++ b/cmds_sh/foo_2023-04-28_09-51-35.sh @@ -0,0 +1,5 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_09-52-49.sh b/cmds_sh/foo_2023-04-28_09-52-49.sh new file mode 100644 index 0000000..4f73a9a --- /dev/null +++ b/cmds_sh/foo_2023-04-28_09-52-49.sh @@ -0,0 +1,5 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_09-54-39.sh b/cmds_sh/foo_2023-04-28_09-54-39.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_09-54-39.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-04-30.sh b/cmds_sh/foo_2023-04-28_10-04-30.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-04-30.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-05-31.sh b/cmds_sh/foo_2023-04-28_10-05-31.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-05-31.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-08-44.sh b/cmds_sh/foo_2023-04-28_10-08-44.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-08-44.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-09-05.sh b/cmds_sh/foo_2023-04-28_10-09-05.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-09-05.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-11-13.sh b/cmds_sh/foo_2023-04-28_10-11-13.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-11-13.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-11-34.sh b/cmds_sh/foo_2023-04-28_10-11-34.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-11-34.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-15-29.sh b/cmds_sh/foo_2023-04-28_10-15-29.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-15-29.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-16-08.sh b/cmds_sh/foo_2023-04-28_10-16-08.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-16-08.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-17-09.sh b/cmds_sh/foo_2023-04-28_10-17-09.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-17-09.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-18-45.sh b/cmds_sh/foo_2023-04-28_10-18-45.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-18-45.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-22-08.sh b/cmds_sh/foo_2023-04-28_10-22-08.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-22-08.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-24-49.sh b/cmds_sh/foo_2023-04-28_10-24-49.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-24-49.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-32-16.sh b/cmds_sh/foo_2023-04-28_10-32-16.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-32-16.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-32-40.sh b/cmds_sh/foo_2023-04-28_10-32-40.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-32-40.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-36-19.sh b/cmds_sh/foo_2023-04-28_10-36-19.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-36-19.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-39-02.sh b/cmds_sh/foo_2023-04-28_10-39-02.sh new file mode 100644 index 0000000..4532b83 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-39-02.sh @@ -0,0 +1,6 @@ +sleep 0 +sleep 1 +xxx +sleep 2 +sleep 3 +sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-39-16.sh b/cmds_sh/foo_2023-04-28_10-39-16.sh new file mode 100644 index 0000000..4532b83 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-39-16.sh @@ -0,0 +1,6 @@ +sleep 0 +sleep 1 +xxx +sleep 2 +sleep 3 +sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-39-46.sh b/cmds_sh/foo_2023-04-28_10-39-46.sh new file mode 100644 index 0000000..4532b83 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-39-46.sh @@ -0,0 +1,6 @@ +sleep 0 +sleep 1 +xxx +sleep 2 +sleep 3 +sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-41-35.sh b/cmds_sh/foo_2023-04-28_10-41-35.sh new file mode 100644 index 0000000..4532b83 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-41-35.sh @@ -0,0 +1,6 @@ +sleep 0 +sleep 1 +xxx +sleep 2 +sleep 3 +sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-41-44.sh b/cmds_sh/foo_2023-04-28_10-41-44.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-41-44.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-42-07.sh b/cmds_sh/foo_2023-04-28_10-42-07.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-42-07.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-42-45.sh b/cmds_sh/foo_2023-04-28_10-42-45.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-42-45.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-42-56.sh b/cmds_sh/foo_2023-04-28_10-42-56.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-42-56.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-43-11.sh b/cmds_sh/foo_2023-04-28_10-43-11.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-43-11.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-43-24.sh b/cmds_sh/foo_2023-04-28_10-43-24.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-43-24.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-45-23.sh b/cmds_sh/foo_2023-04-28_10-45-23.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-45-23.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-45-46.sh b/cmds_sh/foo_2023-04-28_10-45-46.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-45-46.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-46-38.sh b/cmds_sh/foo_2023-04-28_10-46-38.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-46-38.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-46-50.sh b/cmds_sh/foo_2023-04-28_10-46-50.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-46-50.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-46-58.sh b/cmds_sh/foo_2023-04-28_10-46-58.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-46-58.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-47-02.sh b/cmds_sh/foo_2023-04-28_10-47-02.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-47-02.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-47-10.sh b/cmds_sh/foo_2023-04-28_10-47-10.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-47-10.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-47-26.sh b/cmds_sh/foo_2023-04-28_10-47-26.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-47-26.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-47-35.sh b/cmds_sh/foo_2023-04-28_10-47-35.sh new file mode 100644 index 0000000..24b1a96 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-47-35.sh @@ -0,0 +1,6 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 diff --git a/cmds_sh/foo_2023-04-28_10-47-49.sh b/cmds_sh/foo_2023-04-28_10-47-49.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-47-49.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-48-16.sh b/cmds_sh/foo_2023-04-28_10-48-16.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-48-16.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-48-29.sh b/cmds_sh/foo_2023-04-28_10-48-29.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-48-29.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-48-59.sh b/cmds_sh/foo_2023-04-28_10-48-59.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-48-59.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-49-25.sh b/cmds_sh/foo_2023-04-28_10-49-25.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-49-25.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-49-32.sh b/cmds_sh/foo_2023-04-28_10-49-32.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-49-32.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-50-42.sh b/cmds_sh/foo_2023-04-28_10-50-42.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-50-42.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-52-32.sh b/cmds_sh/foo_2023-04-28_10-52-32.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-52-32.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-52-34.sh b/cmds_sh/foo_2023-04-28_10-52-34.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-52-34.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-58-04.sh b/cmds_sh/foo_2023-04-28_10-58-04.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-58-04.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-58-09.sh b/cmds_sh/foo_2023-04-28_10-58-09.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-58-09.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-58-15.sh b/cmds_sh/foo_2023-04-28_10-58-15.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-58-15.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-59-04.sh b/cmds_sh/foo_2023-04-28_10-59-04.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-59-04.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-59-30.sh b/cmds_sh/foo_2023-04-28_10-59-30.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-59-30.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_10-59-56.sh b/cmds_sh/foo_2023-04-28_10-59-56.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_10-59-56.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-00-01.sh b/cmds_sh/foo_2023-04-28_11-00-01.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-00-01.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-00-47.sh b/cmds_sh/foo_2023-04-28_11-00-47.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-00-47.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-01-01.sh b/cmds_sh/foo_2023-04-28_11-01-01.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-01-01.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-01-04.sh b/cmds_sh/foo_2023-04-28_11-01-04.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-01-04.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-01-11.sh b/cmds_sh/foo_2023-04-28_11-01-11.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-01-11.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-01-16.sh b/cmds_sh/foo_2023-04-28_11-01-16.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-01-16.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-01-18.sh b/cmds_sh/foo_2023-04-28_11-01-18.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-01-18.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-02-25.sh b/cmds_sh/foo_2023-04-28_11-02-25.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-02-25.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-02-27.sh b/cmds_sh/foo_2023-04-28_11-02-27.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-02-27.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-02-32.sh b/cmds_sh/foo_2023-04-28_11-02-32.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-02-32.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-02-36.sh b/cmds_sh/foo_2023-04-28_11-02-36.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-02-36.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-02-40.sh b/cmds_sh/foo_2023-04-28_11-02-40.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-02-40.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-02-45.sh b/cmds_sh/foo_2023-04-28_11-02-45.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-02-45.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-02-50.sh b/cmds_sh/foo_2023-04-28_11-02-50.sh new file mode 100644 index 0000000..2dbcd57 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-02-50.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +xxx +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-03-53.sh b/cmds_sh/foo_2023-04-28_11-03-53.sh new file mode 100644 index 0000000..e731b6b --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-03-53.sh @@ -0,0 +1,11 @@ +xxx +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-03-56.sh b/cmds_sh/foo_2023-04-28_11-03-56.sh new file mode 100644 index 0000000..e731b6b --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-03-56.sh @@ -0,0 +1,11 @@ +xxx +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-04-05.sh b/cmds_sh/foo_2023-04-28_11-04-05.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-04-05.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-08-23.sh b/cmds_sh/foo_2023-04-28_11-08-23.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-08-23.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-08-31.sh b/cmds_sh/foo_2023-04-28_11-08-31.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-08-31.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-09-00.sh b/cmds_sh/foo_2023-04-28_11-09-00.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-09-00.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-10-02.sh b/cmds_sh/foo_2023-04-28_11-10-02.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-10-02.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-10-08.sh b/cmds_sh/foo_2023-04-28_11-10-08.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-10-08.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-10-58.sh b/cmds_sh/foo_2023-04-28_11-10-58.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-10-58.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-11-23.sh b/cmds_sh/foo_2023-04-28_11-11-23.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-11-23.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-12-06.sh b/cmds_sh/foo_2023-04-28_11-12-06.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-12-06.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-15-01.sh b/cmds_sh/foo_2023-04-28_11-15-01.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-15-01.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-15-19.sh b/cmds_sh/foo_2023-04-28_11-15-19.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-15-19.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-17-28.sh b/cmds_sh/foo_2023-04-28_11-17-28.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-17-28.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-18-17.sh b/cmds_sh/foo_2023-04-28_11-18-17.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-18-17.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-18-57.sh b/cmds_sh/foo_2023-04-28_11-18-57.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-18-57.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-19-55.sh b/cmds_sh/foo_2023-04-28_11-19-55.sh new file mode 100644 index 0000000..eabf661 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-19-55.sh @@ -0,0 +1,10 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-20-26.sh b/cmds_sh/foo_2023-04-28_11-20-26.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-20-26.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-20-41.sh b/cmds_sh/foo_2023-04-28_11-20-41.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-20-41.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-20-53.sh b/cmds_sh/foo_2023-04-28_11-20-53.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-20-53.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-21-02.sh b/cmds_sh/foo_2023-04-28_11-21-02.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-21-02.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-22-19.sh b/cmds_sh/foo_2023-04-28_11-22-19.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-22-19.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-22-52.sh b/cmds_sh/foo_2023-04-28_11-22-52.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-22-52.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-25-31.sh b/cmds_sh/foo_2023-04-28_11-25-31.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-25-31.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-25-54.sh b/cmds_sh/foo_2023-04-28_11-25-54.sh new file mode 100644 index 0000000..5bb676c --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-25-54.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 5 +xxx +echo 1 && sleep 5 +echo 2 && sleep 5 +echo 3 && sleep 5 +echo 4 && sleep 5 +echo 5 && sleep 5 +echo 6 && sleep 5 +echo 7 && sleep 5 +echo 8 && sleep 5 +echo 9 && sleep 5 diff --git a/cmds_sh/foo_2023-04-28_11-28-04.sh b/cmds_sh/foo_2023-04-28_11-28-04.sh new file mode 100644 index 0000000..5bb676c --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-28-04.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 5 +xxx +echo 1 && sleep 5 +echo 2 && sleep 5 +echo 3 && sleep 5 +echo 4 && sleep 5 +echo 5 && sleep 5 +echo 6 && sleep 5 +echo 7 && sleep 5 +echo 8 && sleep 5 +echo 9 && sleep 5 diff --git a/cmds_sh/foo_2023-04-28_11-28-19.sh b/cmds_sh/foo_2023-04-28_11-28-19.sh new file mode 100644 index 0000000..5bb676c --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-28-19.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 5 +xxx +echo 1 && sleep 5 +echo 2 && sleep 5 +echo 3 && sleep 5 +echo 4 && sleep 5 +echo 5 && sleep 5 +echo 6 && sleep 5 +echo 7 && sleep 5 +echo 8 && sleep 5 +echo 9 && sleep 5 diff --git a/cmds_sh/foo_2023-04-28_11-28-23.sh b/cmds_sh/foo_2023-04-28_11-28-23.sh new file mode 100644 index 0000000..5bb676c --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-28-23.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 5 +xxx +echo 1 && sleep 5 +echo 2 && sleep 5 +echo 3 && sleep 5 +echo 4 && sleep 5 +echo 5 && sleep 5 +echo 6 && sleep 5 +echo 7 && sleep 5 +echo 8 && sleep 5 +echo 9 && sleep 5 diff --git a/cmds_sh/foo_2023-04-28_11-28-29.sh b/cmds_sh/foo_2023-04-28_11-28-29.sh new file mode 100644 index 0000000..5bb676c --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-28-29.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 5 +xxx +echo 1 && sleep 5 +echo 2 && sleep 5 +echo 3 && sleep 5 +echo 4 && sleep 5 +echo 5 && sleep 5 +echo 6 && sleep 5 +echo 7 && sleep 5 +echo 8 && sleep 5 +echo 9 && sleep 5 diff --git a/cmds_sh/foo_2023-04-28_11-28-34.sh b/cmds_sh/foo_2023-04-28_11-28-34.sh new file mode 100644 index 0000000..5bb676c --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-28-34.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 5 +xxx +echo 1 && sleep 5 +echo 2 && sleep 5 +echo 3 && sleep 5 +echo 4 && sleep 5 +echo 5 && sleep 5 +echo 6 && sleep 5 +echo 7 && sleep 5 +echo 8 && sleep 5 +echo 9 && sleep 5 diff --git a/cmds_sh/foo_2023-04-28_11-28-56.sh b/cmds_sh/foo_2023-04-28_11-28-56.sh new file mode 100644 index 0000000..c356651 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-28-56.sh @@ -0,0 +1,11 @@ +echo 0 && sleep i +xxx +echo 1 && sleep i +echo 2 && sleep i +echo 3 && sleep i +echo 4 && sleep i +echo 5 && sleep i +echo 6 && sleep i +echo 7 && sleep i +echo 8 && sleep i +echo 9 && sleep i diff --git a/cmds_sh/foo_2023-04-28_11-29-10.sh b/cmds_sh/foo_2023-04-28_11-29-10.sh new file mode 100644 index 0000000..992b4e2 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-29-10.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +xxx +echo 1 && sleep 1 +echo 2 && sleep 2 +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-29-19.sh b/cmds_sh/foo_2023-04-28_11-29-19.sh new file mode 100644 index 0000000..21aa758 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-29-19.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +xxx +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-29-45.sh b/cmds_sh/foo_2023-04-28_11-29-45.sh new file mode 100644 index 0000000..21aa758 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-29-45.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +xxx +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-31-18.sh b/cmds_sh/foo_2023-04-28_11-31-18.sh new file mode 100644 index 0000000..21aa758 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-31-18.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +xxx +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-31-27.sh b/cmds_sh/foo_2023-04-28_11-31-27.sh new file mode 100644 index 0000000..21aa758 --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-31-27.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 0 +echo 1 && sleep 1 +echo 2 && sleep 2 +xxx +echo 3 && sleep 3 +echo 4 && sleep 4 +echo 5 && sleep 5 +echo 6 && sleep 6 +echo 7 && sleep 7 +echo 8 && sleep 8 +echo 9 && sleep 9 diff --git a/cmds_sh/foo_2023-04-28_11-31-41.sh b/cmds_sh/foo_2023-04-28_11-31-41.sh new file mode 100644 index 0000000..e6b58dd --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-31-41.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 60 +echo 1 && sleep 60 +echo 2 && sleep 60 +xxx +echo 3 && sleep 60 +echo 4 && sleep 60 +echo 5 && sleep 60 +echo 6 && sleep 60 +echo 7 && sleep 60 +echo 8 && sleep 60 +echo 9 && sleep 60 diff --git a/cmds_sh/foo_2023-04-28_11-39-24.sh b/cmds_sh/foo_2023-04-28_11-39-24.sh new file mode 100644 index 0000000..e6b58dd --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-39-24.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 60 +echo 1 && sleep 60 +echo 2 && sleep 60 +xxx +echo 3 && sleep 60 +echo 4 && sleep 60 +echo 5 && sleep 60 +echo 6 && sleep 60 +echo 7 && sleep 60 +echo 8 && sleep 60 +echo 9 && sleep 60 diff --git a/cmds_sh/foo_2023-04-28_11-40-55.sh b/cmds_sh/foo_2023-04-28_11-40-55.sh new file mode 100644 index 0000000..e6b58dd --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-40-55.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 60 +echo 1 && sleep 60 +echo 2 && sleep 60 +xxx +echo 3 && sleep 60 +echo 4 && sleep 60 +echo 5 && sleep 60 +echo 6 && sleep 60 +echo 7 && sleep 60 +echo 8 && sleep 60 +echo 9 && sleep 60 diff --git a/cmds_sh/foo_2023-04-28_11-44-36.sh b/cmds_sh/foo_2023-04-28_11-44-36.sh new file mode 100644 index 0000000..e6b58dd --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-44-36.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 60 +echo 1 && sleep 60 +echo 2 && sleep 60 +xxx +echo 3 && sleep 60 +echo 4 && sleep 60 +echo 5 && sleep 60 +echo 6 && sleep 60 +echo 7 && sleep 60 +echo 8 && sleep 60 +echo 9 && sleep 60 diff --git a/cmds_sh/foo_2023-04-28_11-45-14.sh b/cmds_sh/foo_2023-04-28_11-45-14.sh new file mode 100644 index 0000000..e6b58dd --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-45-14.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 60 +echo 1 && sleep 60 +echo 2 && sleep 60 +xxx +echo 3 && sleep 60 +echo 4 && sleep 60 +echo 5 && sleep 60 +echo 6 && sleep 60 +echo 7 && sleep 60 +echo 8 && sleep 60 +echo 9 && sleep 60 diff --git a/cmds_sh/foo_2023-04-28_11-45-27.sh b/cmds_sh/foo_2023-04-28_11-45-27.sh new file mode 100644 index 0000000..e6b58dd --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-45-27.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 60 +echo 1 && sleep 60 +echo 2 && sleep 60 +xxx +echo 3 && sleep 60 +echo 4 && sleep 60 +echo 5 && sleep 60 +echo 6 && sleep 60 +echo 7 && sleep 60 +echo 8 && sleep 60 +echo 9 && sleep 60 diff --git a/cmds_sh/foo_2023-04-28_11-45-56.sh b/cmds_sh/foo_2023-04-28_11-45-56.sh new file mode 100644 index 0000000..e6b58dd --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-45-56.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 60 +echo 1 && sleep 60 +echo 2 && sleep 60 +xxx +echo 3 && sleep 60 +echo 4 && sleep 60 +echo 5 && sleep 60 +echo 6 && sleep 60 +echo 7 && sleep 60 +echo 8 && sleep 60 +echo 9 && sleep 60 diff --git a/cmds_sh/foo_2023-04-28_11-47-41.sh b/cmds_sh/foo_2023-04-28_11-47-41.sh new file mode 100644 index 0000000..e6b58dd --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-47-41.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 60 +echo 1 && sleep 60 +echo 2 && sleep 60 +xxx +echo 3 && sleep 60 +echo 4 && sleep 60 +echo 5 && sleep 60 +echo 6 && sleep 60 +echo 7 && sleep 60 +echo 8 && sleep 60 +echo 9 && sleep 60 diff --git a/cmds_sh/foo_2023-04-28_11-48-14.sh b/cmds_sh/foo_2023-04-28_11-48-14.sh new file mode 100644 index 0000000..e6b58dd --- /dev/null +++ b/cmds_sh/foo_2023-04-28_11-48-14.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 60 +echo 1 && sleep 60 +echo 2 && sleep 60 +xxx +echo 3 && sleep 60 +echo 4 && sleep 60 +echo 5 && sleep 60 +echo 6 && sleep 60 +echo 7 && sleep 60 +echo 8 && sleep 60 +echo 9 && sleep 60 diff --git a/cmds_sh/foo_2023-04-28_13-23-42.sh b/cmds_sh/foo_2023-04-28_13-23-42.sh new file mode 100644 index 0000000..e6b58dd --- /dev/null +++ b/cmds_sh/foo_2023-04-28_13-23-42.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 60 +echo 1 && sleep 60 +echo 2 && sleep 60 +xxx +echo 3 && sleep 60 +echo 4 && sleep 60 +echo 5 && sleep 60 +echo 6 && sleep 60 +echo 7 && sleep 60 +echo 8 && sleep 60 +echo 9 && sleep 60 diff --git a/cmds_sh/foo_2023-04-28_13-28-07.sh b/cmds_sh/foo_2023-04-28_13-28-07.sh new file mode 100644 index 0000000..c258eaa --- /dev/null +++ b/cmds_sh/foo_2023-04-28_13-28-07.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 6 +echo 1 && sleep 6 +echo 2 && sleep 6 +xxx +echo 3 && sleep 6 +echo 4 && sleep 6 +echo 5 && sleep 6 +echo 6 && sleep 6 +echo 7 && sleep 6 +echo 8 && sleep 6 +echo 9 && sleep 6 diff --git a/cmds_sh/foo_2023-04-28_14-19-31.sh b/cmds_sh/foo_2023-04-28_14-19-31.sh new file mode 100644 index 0000000..c258eaa --- /dev/null +++ b/cmds_sh/foo_2023-04-28_14-19-31.sh @@ -0,0 +1,11 @@ +echo 0 && sleep 6 +echo 1 && sleep 6 +echo 2 && sleep 6 +xxx +echo 3 && sleep 6 +echo 4 && sleep 6 +echo 5 && sleep 6 +echo 6 && sleep 6 +echo 7 && sleep 6 +echo 8 && sleep 6 +echo 9 && sleep 6 diff --git a/cmds_sh/foo_2023-04-28_14-20-01.sh b/cmds_sh/foo_2023-04-28_14-20-01.sh new file mode 100644 index 0000000..86cf64f --- /dev/null +++ b/cmds_sh/foo_2023-04-28_14-20-01.sh @@ -0,0 +1,10 @@ +echo 0 && sleep 6 +echo 1 && sleep 6 +echo 2 && sleep 6 +echo 3 && sleep 6 +echo 4 && sleep 6 +echo 5 && sleep 6 +echo 6 && sleep 6 +echo 7 && sleep 6 +echo 8 && sleep 6 +echo 9 && sleep 6 diff --git a/cmds_sh/foo_2023-04-28_14-40-44.sh b/cmds_sh/foo_2023-04-28_14-40-44.sh new file mode 100644 index 0000000..86cf64f --- /dev/null +++ b/cmds_sh/foo_2023-04-28_14-40-44.sh @@ -0,0 +1,10 @@ +echo 0 && sleep 6 +echo 1 && sleep 6 +echo 2 && sleep 6 +echo 3 && sleep 6 +echo 4 && sleep 6 +echo 5 && sleep 6 +echo 6 && sleep 6 +echo 7 && sleep 6 +echo 8 && sleep 6 +echo 9 && sleep 6 diff --git a/dist/bioinfor_tools-0.1-py3-none-any.whl b/dist/bioinfor_tools-0.1-py3-none-any.whl new file mode 100644 index 0000000..7e53ced Binary files /dev/null and b/dist/bioinfor_tools-0.1-py3-none-any.whl differ diff --git a/setup.py b/setup.py new file mode 100644 index 0000000..d24a2d9 --- /dev/null +++ b/setup.py @@ -0,0 +1,12 @@ +from setuptools import setup + +setup( + name='bioinfor_tools', + version='v0.1', + packages=['bioinfor_tools'], + url='', + license='', + author='jmzhang', + author_email='jmzhang1911@gmail.com', + description='' +) diff --git a/test.py b/test.py new file mode 100644 index 0000000..2cd7463 --- /dev/null +++ b/test.py @@ -0,0 +1,78 @@ +#!/share/nas2/genome/biosoft/Python//3.7.3/bin/python3 +# -*- coding: utf-8 -*- +# @Time : 2023/4/28 09:16 +# @Author : jmzhang +# @Email : jmzhang1911@gmail.com +import logging + +import bioinfor_tools as bt +from bioinfor_tools._bio_basic import BioBasic + + +@bt.cmd_wrapper(n_jobs=5) +def foo(): + cmd = list() + for i in range(10): + cmd.append('echo {} && sleep 6'.format(i, i)) + + #cmd.insert(3, 'xxx') + logging.info(cmd) + return cmd, 'hello' + + +class B(bt.BioBasic): + pass + + +bt.cmd(['sleep 2 && echo done']) +bt.cmd(['sleep 3 && echo done']) +foo() + +# foo() +# print('done') + +# SuperFastPython.com +# example of stopping all running tasks when one task fails +from time import sleep +from threading import Event +from concurrent.futures import ThreadPoolExecutor +from concurrent.futures import wait +from concurrent.futures import FIRST_EXCEPTION + + +# mock target task function +def work(event, name): + # pretend read data for a long time + for _ in range(10): + # pretend to read some data + sleep(3) + # check if this task should fail + if name == 6: + print(f'Task has failed, name={name}') + raise Exception('Something bad happened') + # check if the task should stop + if event.is_set(): + print(f'Stopping, name={name}') + return + +# create an event used to stop running tasks +# event = Event() +# # create a thread pool +# with ThreadPoolExecutor(5) as executor: +# # execute many tasks +# futures = [executor.submit(work, event, i) for i in range(10)] +# # wait for all tasks to complete, or one task to fail +# print('Waiting for tasks to complete, or fail...') +# done, not_done = wait(futures, return_when=FIRST_EXCEPTION) +# # check if not all tasks are done +# if len(done) > 0 and len(done) != len(futures): +# # check if an exception was raised +# future = done.pop() +# if future.exception() != None: +# print(f'One task failed with: {future.exception()}, shutting down') +# # cancel any scheduled tasks +# for future in futures: +# future.cancel() +# # stop all running tasks +# event.set() +# print('All done.')