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index.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="description" content="">
<meta name="author" content="">
<title>Drug Safety Portal 2.0- A drug safety information portal and research registry</title>
<!-- Bootstrap Core CSS -->
<link href="css/bootstrap.min.css" rel="stylesheet">
<!-- Custom CSS -->
<link href="css/agency.css" rel="stylesheet">
<!-- Custom Fonts -->
<link href="font-awesome/css/font-awesome.min.css" rel="stylesheet" type="text/css">
<link href="https://fonts.googleapis.com/css?family=Montserrat:400,700" rel="stylesheet" type="text/css">
<link href='https://fonts.googleapis.com/css?family=Kaushan+Script' rel='stylesheet' type='text/css'>
<link href='https://fonts.googleapis.com/css?family=Droid+Serif:400,700,400italic,700italic' rel='stylesheet' type='text/css'>
<link href='https://fonts.googleapis.com/css?family=Roboto+Slab:400,100,300,700' rel='stylesheet' type='text/css'>
<!-- HTML5 Shim and Respond.js IE8 support of HTML5 elements and media queries -->
<!-- WARNING: Respond.js doesn't work if you view the page via file:// -->
<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/libs/html5shiv/3.7.0/html5shiv.js"></script>
<script src="https://oss.maxcdn.com/libs/respond.js/1.4.2/respond.min.js"></script>
<![endif]-->
</head>
<body id="page-top" class="index">
<!-- Navigation -->
<nav class="navbar navbar-default navbar-fixed-top">
<div class="container">
<!-- Brand and toggle get grouped for better mobile display -->
<div class="navbar-header page-scroll">
<button type="button" class="navbar-toggle" data-toggle="collapse" data-target="#bs-example-navbar-collapse-1">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand page-scroll" href="#page-top">Drug Safety Portal v 2.0</a>
</div>
<!-- Collect the nav links, forms, and other content for toggling -->
<div class="collapse navbar-collapse" id="bs-example-navbar-collapse-1">
<ul class="nav navbar-nav navbar-right">
<li class="hidden">
<a href="#page-top"></a>
</li>
<li>
<a class="page-scroll" href="#drug">Drug Search</a>
</li>
<li>
<a class="page-scroll" href="./ds_exp/login.php">Researcher Portal</a>
</li>
<li>
<a class="page-scroll" href="#tech">Technology Stack</a>
</li>
<li>
<a class="page-scroll" href="#about">Data Sources</a>
</li>
<li>
<a class="page-scroll" href="#team">About Us</a>
</li>
</ul>
</div>
<!-- /.navbar-collapse -->
</div>
<!-- /.container-fluid -->
</nav>
<!-- Header -->
<header>
<div class="container">
<div class="intro-text">
<div class="intro-lead-in">An adverse drug reaction (ADR) is an injury caused by taking a medication</div>
<div class="intro-heading">Drug related morbidity and mortality was estimated to be $177.4 billion and rising in the US</div>
<a href="#drug" class="page-scroll btn btn-xl">Want to check what you are taking?</a>
</div>
</div>
</header>
<!-- Technology -->
<section id="drug">
<div class="container">
<div class="row">
<div class="col-lg-12 text-center">
<h2 class="section-heading">Drug Search</h2>
<h3> Disclaimer: The information presented here is for educational and research purposes and is provided as-is. Please do not discontinue any medication until you consult with your physician. </h3>
<h3 class="section-subheading text-muted">Type in the drugs you want to test for adverse events and interactions</h3>
</div>
</div>
</div>
<div class="col-lg-12 text-center fill">
<iframe class="fill" src="queryform.php" width="90%" frameborder="0" height="40%"></iframe>
</div>
</section>
<!-- Drug Search -->
<section id="tech">
<div class="container">
<div class="row">
<div class="col-lg-12 text-center">
<h2 class="section-heading">APIs Used</h2>
<h3 class="section-subheading text-muted">Anybody in the pharmaceutical industry knows that drugs are a messy thing to deal with from the a data perspective. Here are all the tools needed to bring this project to life</h3>
</div>
</div>
<div class="row">
<div class="col-md-4 col-sm-6 portfolio-item">
<a href="#portfolioModal1" class="portfolio-link" data-toggle="modal">
<img src="img/portfolio/bioportal.png" class="img-responsive" alt="">
</a>
<div class="portfolio-caption">
<h4>NCBO BioPortal</h4>
<p class="text-muted">For text annotation into ontology concepts</p>
</div>
</div>
<div class="col-md-4 col-sm-6 portfolio-item">
<a href="#portfolioModal2" class="portfolio-link" data-toggle="modal">
<img src="img/portfolio/nlm_mesh.png" class="img-responsive" alt="">
</a>
<div class="portfolio-caption">
<h4>NLM MESH on demand</h4>
<p class="text-muted">For drug name linkage with Medline and Pubmed</p>
</div>
</div>
<div class="col-md-4 col-sm-6 portfolio-item">
<a href="#portfolioModal3" class="portfolio-link" data-toggle="modal">
<img src="img/portfolio/nlm_medline.png" class="img-responsive" alt="">
</a>
<div class="portfolio-caption">
<h4>NLM Medline</h4>
<p class="text-muted">For literature querying of adverse events</p>
</div>
</div>
<div class="col-md-4 col-sm-6 portfolio-item">
<a href="#portfolioModal4" class="portfolio-link" data-toggle="modal">
<img src="img/portfolio/nlm_pubmed.png" class="img-responsive" alt="">
</a>
<div class="portfolio-caption">
<h4>NLM Pubmed</h4>
<p class="text-muted">For literature relevant retrieval</p>
</div>
</div>
<div class="col-md-4 col-sm-6 portfolio-item">
<a href="#portfolioModal5" class="portfolio-link" data-toggle="modal">
<img src="img/portfolio/open_fda.png" class="img-responsive" alt="">
</a>
<div class="portfolio-caption">
<h4>openFDA</h4>
<p class="text-muted">For FAERS reporting data gathering</p>
</div>
</div>
<div class="col-md-4 col-sm-6 portfolio-item">
<a href="#portfolioModal6" class="portfolio-link" data-toggle="modal">
<img src="img/portfolio/bio2rdf_logo.png" class="img-responsive" alt="">
</a>
<div class="portfolio-caption">
<h4>bio2rdf.org</h4>
<p class="text-muted">Extrenal linkage to over 150 datasets via MeSH identifiers</p>
</div>
</div>
</div>
</div>
</section>
<!-- Data Sources Section -->
<section id="about">
<div class="container">
<div class="row">
<div class="col-lg-12 text-center">
<h2 class="section-heading">Data Sources Used</h2>
<h3 class="section-subheading text-muted">For the drug-drug interaction data we have scraped predictions generated from research publications and from these sources (and others not listed here)</h3>
</div>
</div>
<div class="row">
<div class="col-lg-12">
<ul class="timeline">
<li>
<div class="timeline-image">
<img class="img-circle img-responsive" src="img/about/stanford.png" alt="">
</div>
<div class="timeline-panel">
<div class="timeline-heading">
<h4>Stanford University</h4>
<h4 class="subheading"></h4>
</div>
<div class="timeline-body">
<p class="text-muted">* Iyer, S. V., Harpaz, R., LePendu, P., Bauer-Mehren, A., & Shah, N. H. (2014). Mining clinical text for signals of adverse drug-drug interactions. Journal of the American Medical Informatics Association : JAMIA, 21(2), 353–362. http://doi.org/10.1136/amiajnl-2013-001612</p>
<p class="text-muted">* J.M. Banda, A. Callahan, R. Winnenburg, H. Strasberg, A. Cami, B. R
eis, S. Vilar, G. Hripcsak, M. Dumontier, N.H. Shah. “Feasibility of prioritizing Drug-Drug-Event Associations
Found in Electronic Health Records” accepted Drug Safety. 2015.
</p>
</div>
</div>
</li>
<li class="timeline-inverted">
<div class="timeline-image">
<img class="img-circle img-responsive" src="img/about/harvard.png" alt="">
</div>
<div class="timeline-panel">
<div class="timeline-heading">
<h4>Harvard University</h4>
<h4 class="subheading"></h4>
</div>
<div class="timeline-body">
<p class="text-muted">* Cami, A., Manzi, S., Arnold, A., & Reis, B. Y. (2013). Pharmacointeraction Network Models Predict Unknown Drug-Drug Interactions. PLoS ONE, 8(4), e61468. http://doi.org/10.1371/journal.pone.0061468</p>
</div>
</div>
</li>
<li>
<div class="timeline-image">
<img class="img-circle img-responsive" src="img/about/columbia.png" alt="">
</div>
<div class="timeline-panel">
<div class="timeline-heading">
<h4>Columbia University</h4>
<h4 class="subheading"></h4>
</div>
<div class="timeline-body">
<p class="text-muted">* Vilar, S., Uriarte, E., Santana, L., Lorberbaum, T., Hripcsak, G., Friedman, C., & Tatonetti, N. P. (2014). Similarity-based modeling in large-scale prediction of drug-drug interactions. Nature Protocols, 9(9), 2147–2163. http://doi.org/10.1038/nprot.2014.151</p>
<p class="text-muted">
* Tatonetti, N. P., Fernald, G. H., & Altman, R. B. (2012). A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports. Journal of the American Medical Informatics Association : JAMIA, 19(1), 79–85. http://doi.org/10.1136/amiajnl-2011-000214
</p>
</div>
</div>
</li>
</ul>
</div>
</div>
</div>
</section>
<!-- Team Section -->
<section id="team" class="bg-light-gray">
<div class="container">
<div class="row">
<div class="col-lg-12 text-center">
<h2 class="section-heading">Team</h2>
<h3 class="section-subheading text-muted">Created for Tech Crunch Disrupt - Hackathon - September 19-20, 2015</h3>
</div>
</div>
<div class="row">
<div class="col-sm-4">
<div class="team-member">
</div>
</div>
<div class="col-sm-4">
<div class="team-member">
<img src="img/team/juan.png" class="img-responsive img-circle" alt="">
<h4>Juan M. Banda</h4>
<p class="text-muted">What am I Taking? - a drug safety information portal creator and dataset wrangler</p>
<ul class="list-inline social-buttons">
<li><a href="http://twitter.com/drjmbanda" target="_blank"><i class="fa fa-twitter"></i></a>
</li>
<li><a href="http://linkedin.com/in/jmbanda" target="_blank"><i class="fa fa-linkedin"></i></a>
</li>
</ul>
</div>
</div>
<div class="col-sm-4">
<div class="team-member">
</div>
</div>
</div>
</div>
</section>
<footer>
<div class="container">
<div class="row">
<div class="col-md-4">
<span class="copyright">Copyright © What am I Taking? - a drug safety information portal 2015</span>
</div>
<div class="col-md-4">
<ul class="list-inline social-buttons">
<li><a href="#"><i class="fa fa-twitter"></i></a>
</li>
<li><a href="#"><i class="fa fa-facebook"></i></a>
</li>
<li><a href="#"><i class="fa fa-linkedin"></i></a>
</li>
</ul>
</div>
<div class="col-md-4">
<ul class="list-inline quicklinks">
<li><a href="#">Privacy Policy</a>
</li>
<li><a href="#">Terms of Use</a>
</li>
</ul>
</div>
</div>
</div>
</footer>
<!-- jQuery -->
<script src="js/jquery.js"></script>
<!-- Bootstrap Core JavaScript -->
<script src="js/bootstrap.min.js"></script>
<!-- Plugin JavaScript -->
<script src="http://cdnjs.cloudflare.com/ajax/libs/jquery-easing/1.3/jquery.easing.min.js"></script>
<script src="js/classie.js"></script>
<script src="js/cbpAnimatedHeader.js"></script>
<!-- Contact Form JavaScript -->
<script src="js/jqBootstrapValidation.js"></script>
<script src="js/contact_me.js"></script>
<!-- Custom Theme JavaScript -->
<script src="js/agency.js"></script>
</body>
</html>