wrong truth?

[sjanssen2]

gapc-test-suite/Truth/Regress/adpf.mfepp.foo.out

Line 35 in 5a7fa36

( -2490 , (((((((.(((.(((.....)))))).))))).))..(((....((..((((.(((((((((((.....)))..)).))))))))))..))...)))... )

RNAeval 2.4.17 says:

(base) t490s x86_64 ~/src/ViennaRNA-2.4.17/src/bin>RNAeval -v -d 2 -P /home/sjanssen//share/gapc/librna/rna_turner1999.par 

Use '&' to connect 2 sequences that shall form a complex.
Input sequence (upper or lower case) followed by structure; @ to quit
....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8
cguaggccugcagcaagaacugcgcaugcuugucguagaggccaauagagcugaucuggcaaucguaaagguaguguuuagguagcuucauguauucauc
(((((((.(((.(((.....)))))).))))).))..(((....((..((((.(((((((((((.....)))..)).))))))))))..))...)))...

length = 100
External loop                           :  -250
Interior loop (  1, 35) CG; (  2, 34) GC:  -240
Interior loop (  2, 34) GC; (  3, 32) UG:   130
Interior loop (  3, 32) UG; (  4, 31) AU:  -100
Interior loop (  4, 31) AU; (  5, 30) GU:   -60
Interior loop (  5, 30) GU; (  6, 29) GC:  -210
Interior loop (  6, 29) GC; (  7, 28) CG:  -340
Interior loop (  7, 28) CG; (  9, 26) UA:   110
Interior loop (  9, 26) UA; ( 10, 25) GC:  -210
Interior loop ( 10, 25) GC; ( 11, 24) CG:  -340
Interior loop ( 11, 24) CG; ( 13, 23) GC:   140
Interior loop ( 13, 23) GC; ( 14, 22) CG:  -340
Interior loop ( 14, 22) CG; ( 15, 21) AU:  -210
Hairpin  loop ( 15, 21) AU              :   510
Interior loop ( 38, 97) GC; ( 39, 96) AU:  -240
Interior loop ( 39, 96) AU; ( 40, 95) GU:   -60
Interior loop ( 40, 95) GU; ( 45, 91) AU:   190
Interior loop ( 45, 91) AU; ( 46, 90) UA:  -110
Interior loop ( 46, 90) UA; ( 49, 87) AU:     0
Interior loop ( 49, 87) AU; ( 50, 86) GC:  -210
Interior loop ( 50, 86) GC; ( 51, 85) CG:  -340
Interior loop ( 51, 85) CG; ( 52, 84) UA:  -210
Interior loop ( 52, 84) UA; ( 54, 83) AU:   250
Interior loop ( 54, 83) AU; ( 55, 82) UG:  -140
Interior loop ( 55, 82) UG; ( 56, 81) CG:  -150
Interior loop ( 56, 81) CG; ( 57, 80) UA:  -210
Interior loop ( 57, 80) UA; ( 58, 79) GU:  -100
Interior loop ( 58, 79) GU; ( 59, 78) GU:   -50
Interior loop ( 59, 78) GU; ( 60, 76) CG:   130
Interior loop ( 60, 76) CG; ( 61, 75) AU:  -210
Interior loop ( 61, 75) AU; ( 62, 72) AU:   380
Interior loop ( 62, 72) AU; ( 63, 71) UG:  -140
Interior loop ( 63, 71) UG; ( 64, 70) CG:  -150
Hairpin  loop ( 64, 70) CG              :   340
cguaggccugcagcaagaacugcgcaugcuugucguagaggccaauagagcugaucuggcaaucguaaagguaguguuuagguagcuucauguauucauc
(((((((.(((.(((.....)))))).))))).))..(((....((..((((.(((((((((((.....)))..)).))))))))))..))...)))...
 energy = -24.40 kcal/mol

Check what fold-grammars say!