build-test-rust-minimap2.yaml

name: minimap2-rs

on:
  pull_request:
    types: [opened, synchronize]
#    paths: 
#      - 'src/'
#      - 'Cargo.toml'
#      - 'test_data/'   
#      - 'minimap2-sys/'
env:
  CARGO_TERM_COLOR: always

jobs:
  test-musl:
    runs-on: ubuntu-latest
    container: messense/rust-musl-cross:x86_64-musl
    steps:
    - uses: actions/checkout@v4
      with:
        submodules: 'recursive'
    - name: Build
      run: cargo build --verbose
    - name: Run tests
      run: cargo test
    - name: Run tests htslib
      run: cargo test --features htslib

  test:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
      with:
        submodules: 'recursive'
    - name: Build
      run: cargo build --verbose
    - name: Run tests
      run: cargo test --verbose
    - name: Run tests htslib
      run: cargo test --features htslib
    - name: Run tests simde
      run: cargo test --features simde

  test-macos:
    runs-on: macos-latest
    steps:
    - uses: actions/checkout@v4
      with:
        submodules: 'recursive'
    - name: Build
      run: cargo build --verbose
    - name: Run tests
      run: cargo test --verbose
    - name: Run tests htslib
      run: cargo test --features htslib
    - name: Run tests simde
      run: cargo test --features simde

  test-android:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
      with:
        submodules: 'recursive'
    - name: Install Rust Cross
      run: rustup target add aarch64-linux-android armv7-linux-androideabi i686-linux-android x86_64-linux-android
    - run: cargo install cross --git https://github.com/cross-rs/cross
    - name: Run minimap2 tests on Android aarch64
      run: cross test --target aarch64-linux-android
    - name: Run minimap2 tests on Android x86_64
      run: cross test --target x86_64-linux-android