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references.bib
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@article{Blackwood2018a,
title = {An introduction to compartmental modeling for the budding infectious disease modeler},
volume = {5},
issn = {23737867},
doi = {10.1080/23737867.2018.1509026},
abstract = {Mathematical models are ubiquitous in the study of the transmission dynamics of infectious diseases, In particular, the classic ‘susceptible-infectious-recovered’ (SIR) paradigm provides a modeling framework that can be adapted to describe the core transmission dynamics of a range of human and wildlife diseases. These models provide an important tool for uncovering the mechanisms generating observed disease dynamics, evaluating potential control strategies, and predicting future outbreaks. With ongoing advances in computational tools as well as access to disease incidence data, the use of such models continues to increase. Here, we provide a basic introduction to disease modeling that is primarily intended for individuals who are new to developing SIR-type models. In particular, we highlight several common issues encountered when structuring and analyzing these models.},
number = {1},
journal = {Letters in Biomathematics},
author = {Blackwood, Julie C. and Childs, Lauren M.},
year = {2018},
keywords = {basic reproductive number, compartmental model, Mathematical model, transmission},
pages = {195--221},
file = {PDF:/Users/lshja16/Zotero/storage/BSZIJW3X/An introduction to compartmental modeling for the budding infectious disease modeler.pdf:application/pdf},
}
@article{Box1979,
title={All models are wrong, but some are useful},
author={Box, GE},
journal={Robustness in Statistics},
volume={202},
number={1979},
pages={549},
year={1979}
}
@article{kermack1927contribution,
title={A contribution to the mathematical theory of epidemics},
author={Kermack, William Ogilvy and McKendrick, Anderson G},
journal={Proceedings of the royal society of london. Series A, Containing papers of a mathematical and physical character},
volume={115},
number={772},
pages={700--721},
year={1927},
publisher={The Royal Society London}
}
@article{yadav2021statistical,
title={Statistical modeling for the prediction of infectious disease dissemination with special reference to COVID-19 spread},
author={Yadav, Subhash Kumar and Akhter, Yusuf},
journal={Frontiers in public health},
volume={9},
pages={645405},
year={2021},
publisher={Frontiers}
}
@article{guerra2017measlesR0,
title={The basic reproduction number (R0) of measles: a systematic review},
author={Guerra, Fiona M and Bolotin, Shelly and Lim, Gillian and Heffernan, Jane and Deeks, Shelley L and Li, Ye and Crowcroft, Natasha S},
journal={The Lancet Infectious Diseases},
volume={17},
number={12},
pages={e420--e428},
year={2017},
publisher={Elsevier}
}
@article{heesterbeek2002brief,
title={A brief history of R 0 and a recipe for its calculation},
author={Heesterbeek, Johan Andre Peter},
journal={Acta biotheoretica},
volume={50},
number={3},
pages={189--204},
year={2002},
publisher={Springer}
}
@article{diekmann2010construction,
title={The construction of next-generation matrices for compartmental epidemic models},
author={Diekmann, Odo and Heesterbeek, JAP and Roberts, Michael G},
journal={Journal of the royal society interface},
volume={7},
number={47},
pages={873--885},
year={2010},
publisher={The Royal Society}
}
@article{diekmann1990definition,
title={On the definition and the computation of the basic reproduction ratio R 0 in models for infectious diseases in heterogeneous populations},
author={Diekmann, Odo and Heesterbeek, Johan Andre Peter and Metz, Johan Anton Jacob},
journal={Journal of mathematical biology},
volume={28},
pages={365--382},
year={1990},
publisher={Springer}
}
@article{anderson1982directly,
title={Directly transmitted infections diseases: control by vaccination},
author={Anderson, Roy M and May, Robert M},
journal={Science},
volume={215},
number={4536},
pages={1053--1060},
year={1982},
publisher={American Association for the Advancement of Science}
}
@article{begon2002clarification,
title={A clarification of transmission terms in host-microparasite models: numbers, densities and areas},
author={Begon, Michael and Bennett, Malcolm and Bowers, Roger G and French, Nigel P and Hazel, SM and Turner, Joseph},
journal={Epidemiology \& Infection},
volume={129},
number={1},
pages={147--153},
year={2002},
publisher={Cambridge University Press}
}
@article{brouwer2022spectral,
title={Why the Spectral Radius? An intuition-building introduction to the basic reproduction number},
author={Brouwer, Andrew F},
journal={Bulletin of Mathematical Biology},
volume={84},
number={9},
pages={96},
year={2022},
publisher={Springer}
}