Virtool is a web-based application for diagnosing viral infections in plant samples using Illumina sequencing.
Website: https://www.virtool.ca Gitter: https://gitter.im/virtool
| Software | Version | Use |
|---|---|---|
| AODP | 2.5.0.1 | Barcode-based amplicon analysis |
| Bowtie2 | 2.3.2 | Read mapping for known and novel virus analysis |
| FastQC | 0.11.8 | Read quality analyis |
| FLASH | 1.2.11 | Read joining during amplicon analysis |
| HMMER | 3.1b2 | Viral motif prediction for novel virus analysis |
| MongoDB | 3.6.0 | Backing database |
| Skewer | 0.2.2 | Read trimming |
| SPAdes | 3.11.0 | Contig assembly during amplicon analysis |