Initial commit

.Rbuildignore

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+^.*\.Rproj$
+^\.Rproj\.user$
+^\.ccache$
+^\.github$
+^tic\.R$

.github/workflows/tic.yml

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+## tic GitHub Actions template: linux-macos-windows-deploy
+## revision date: 2020-06-14
+on:
+  push:
+  pull_request:
+  # for now, CRON jobs only run on the default branch of the repo (i.e. usually on master)
+  schedule:
+    # * is a special character in YAML so you have to quote this string
+    - cron: "0 4 * * *"
+
+name: tic
+
+jobs:
+  all:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          # use a different tic template type if you do not want to build on all listed platforms
+          - { os: windows-latest, r: "release" }
+          - { os: macOS-latest, r: "release", pkgdown: "true", latex: "true" }
+          - { os: macOS-latest, r: "devel" }
+          - { os: ubuntu-latest, r: "release" }
+
+    env:
+      # otherwise remotes::fun() errors cause the build to fail. Example: Unavailability of binaries
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      CRAN: ${{ matrix.config.cran }}
+      # make sure to run `tic::use_ghactions_deploy()` to set up deployment
+      TIC_DEPLOY_KEY: ${{ secrets.TIC_DEPLOY_KEY }}
+      # prevent rgl issues because no X11 display is available
+      RGL_USE_NULL: true
+      # if you use bookdown or blogdown, replace "PKGDOWN" by the respective
+      # capitalized term. This also might need to be done in tic.R
+      BUILD_PKGDOWN: ${{ matrix.config.pkgdown }}
+      # macOS >= 10.15.4 linking
+      SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
+      # use GITHUB_TOKEN from GitHub to workaround rate limits in {remotes}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/[email protected]
+
+      - uses: r-lib/actions/setup-r@master
+        with:
+          r-version: ${{ matrix.config.r }}
+          Ncpus: 4
+
+      # LaTeX. Installation time:
+      # Linux: ~ 1 min
+      # macOS: ~ 1 min 30s
+      # Windows: never finishes
+      - uses: r-lib/actions/setup-tinytex@master
+        if: matrix.config.latex == 'true'
+
+      - uses: r-lib/actions/setup-pandoc@master
+
+      # set date/week for use in cache creation
+      # https://github.community/t5/GitHub-Actions/How-to-set-and-access-a-Workflow-variable/m-p/42970
+      # - cache R packages daily
+      - name: "[Cache] Prepare daily timestamp for cache"
+        if: runner.os != 'Windows'
+        id: date
+        run: echo "::set-output name=date::$(date '+%d-%m')"
+
+      - name: "[Cache] Cache R packages"
+        if: runner.os != 'Windows'
+        uses: pat-s/[email protected]
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}}
+          restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}}
+
+      # for some strange Windows reason this step and the next one need to be decoupled
+      - name: "[Stage] Prepare"
+        run: |
+          Rscript -e "if (!requireNamespace('remotes')) install.packages('remotes', type = 'source')"
+          Rscript -e "if (getRversion() < '3.2' && !requireNamespace('curl')) install.packages('curl', type = 'source')"
+
+      - name: "[Stage] [Linux] Install curl"
+        if: runner.os == 'Linux'
+        run: sudo apt install libcurl4-openssl-dev
+
+      - name: "[Stage] Install"
+        if: matrix.config.os != 'macOS-latest' || matrix.config.r != 'devel'
+        run: Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()"
+
+      # macOS devel needs its own stage because we need to work with an option to suppress the usage of binaries
+      - name: "[Stage] Prepare & Install (macOS-devel)"
+        if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'devel'
+        run: |
+          echo -e 'options(Ncpus = 4, pkgType = "source", repos = structure(c(CRAN = "https://cloud.r-project.org/")))' > $HOME/.Rprofile
+          Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()"
+
+      - name: "[Stage] Script"
+        run: Rscript -e 'tic::script()'
+
+      - name: "[Stage] After Success"
+        if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release'
+        run: Rscript -e "tic::after_success()"
+
+      - name: "[Stage] Upload R CMD check artifacts"
+        if: failure()
+        uses: actions/upload-artifact@master
+        with:
+          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+          path: check
+      - name: "[Stage] Before Deploy"
+        run: |
+          Rscript -e "tic::before_deploy()"
+
+      - name: "[Stage] Deploy"
+        run: Rscript -e "tic::deploy()"
+
+      - name: "[Stage] After Deploy"
+        run: Rscript -e "tic::after_deploy()"

.gitignore

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+inst/doc
+.Rhistory
+.RData
+.Rproj.user
+.DS_Store
+julyukrelease_tcm77-369384.xls
+wu03ew_v2.csv
+docs/

CODE_OF_CONDUCT.md

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+# Contributor Code of Conduct
+
+As contributors and maintainers of this project, we pledge to respect all people who 
+contribute through reporting issues, posting feature requests, updating documentation,
+submitting pull requests or patches, and other activities.
+
+We are committed to making participation in this project a harassment-free experience for
+everyone, regardless of level of experience, gender, gender identity and expression,
+sexual orientation, disability, personal appearance, body size, race, ethnicity, age, or religion.
+
+Examples of unacceptable behavior by participants include the use of sexual language or
+imagery, derogatory comments or personal attacks, trolling, public or private harassment,
+insults, or other unprofessional conduct.
+
+Project maintainers have the right and responsibility to remove, edit, or reject comments,
+commits, code, wiki edits, issues, and other contributions that are not aligned to this 
+Code of Conduct. Project maintainers who do not follow the Code of Conduct may be removed 
+from the project team.
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by 
+opening an issue or contacting one or more of the project maintainers.
+
+This Code of Conduct is adapted from the Contributor Covenant 
+(http://contributor-covenant.org), version 1.0.0, available at 
+http://contributor-covenant.org/version/1/0/0/

DESCRIPTION

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+Package: RPackageTemplate
+Type: Package
+Title: What the Package Does (Title Case)
+Version: 0.1.0
+Authors@R: c(
+    person("Malcolm", "Morgan", email = "[email protected]", role = c("aut"), 
+      comment = c(ORCID = "0000-0002-9488-9183")),
+    person("Robin", "Lovelace", email = "[email protected]",      role = c("aut","cre"),
+      comment = c(ORCID = "0000-0001-5679-6536"))
+    )
+Maintainer: The package maintainer <[email protected]>
+Description: More about what it does (maybe more than one line)
+    Use four spaces when indenting paragraphs within the Description.
+Language: EN-GB
+License: file LICENSE
+URL: https://github.com/ITSLeeds/RPackageTemplate, https://itsleeds.github.io/RPackageTemplate/
+BugReports: https://github.com/ITSLeeds/RPackageTemplate/issues
+Encoding: UTF-8
+LazyData: true
+Imports:
+    usethis,
+    devtools,
+    goodpractice
+RoxygenNote: 6.1.1
+Suggests: 
+    covr,
+    knitr,
+    rmarkdown,
+    testthat
+VignetteBuilder: knitr