From 54dda38d7f2bc7dc7b6bc02bc5902be435528177 Mon Sep 17 00:00:00 2001
From: Golam Shaifullah <golam.shaifullah@gmail.com>
Date: Tue, 19 Dec 2023 14:42:36 +0100
Subject: [PATCH 1/2] Dockerfile is 1:1 mirror of anaconda-env.yaml

---
 anaconda-env.yml      |  2 +-
 containers/Dockerfile | 79 +++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 80 insertions(+), 1 deletion(-)

diff --git a/anaconda-env.yml b/anaconda-env.yml
index 3167bea..d81fa73 100644
--- a/anaconda-env.yml
+++ b/anaconda-env.yml
@@ -1,4 +1,4 @@
-name: IPTA_Env
+name: IPTA_Env_new
 channels:
   - conda-forge
   - defaults
diff --git a/containers/Dockerfile b/containers/Dockerfile
index e69de29..73171ee 100644
--- a/containers/Dockerfile
+++ b/containers/Dockerfile
@@ -0,0 +1,79 @@
+FROM mambaorg/micromamba
+RUN micromamba install --yes --name base\
+  -c conda-forge\
+  -c defaults\
+  -c demorest\
+  python=3.9\
+  pip\
+  mkl\
+  jupyter\
+  ca-certificates\
+  certifi\
+  openssl\
+  libblas[build=*mkl]\
+  tempo2\
+  matplotlib\
+  astropy\
+  bokeh\
+  bottleneck\
+  dask\
+  h5py\
+  imagecodecs\
+  imageio\
+  ipympl\
+  numba\
+  numexpr\
+  pandas\
+  patsy\
+  pyerfa\
+  pytables\
+  pywavelets\
+  scikit-image\
+  scikit-learn\
+  scikit-sparse\
+  scipy\
+  seaborn\
+  seaborn-base\
+  statsmodels\
+  tifffile\
+  vincent\
+  yt\
+  gmp\
+  mpfr\
+  nose\
+  suitesparse\
+  ptmcmcsampler\
+  wand\
+  marshmallow\
+  cython\
+  healpy\
+  jplephem\
+  ephem\
+  corner\
+  pyyaml\
+  ruamel.yaml\
+  pytest\
+  docutils\
+  pytest-xdist\
+  psrchive\
+  psrqpy\
+  libstempo\
+  pint-pulsar>=0.9\
+  mpi4py\
+  enterprise-pulsar\
+  enterprise_outliers\
+  enterprise_extensions\
+  astroquery\
+  pandas\
+  pgplot\
+  pint-pal>=0.1.0\
+  pymultinest>=2.11\
+  acor>=1.1.1\
+  pypulse>=0.1.1\
+  gitpython
+
+RUN micromamba clean --all --yes
+
+ARG MAMBA_DOCKERFILE_ACTIVATE=1
+
+RUN pip install --no-cache git+https://github.com/pennucci/PulsePortraiture.git@py3

From 2311782e1d418526d89c3f52da38307fc212cd7f Mon Sep 17 00:00:00 2001
From: Joseph Glaser <astroglaser@gmail.com>
Date: Wed, 21 Feb 2024 15:40:52 -0500
Subject: [PATCH 2/2] Update anaconda-env.yml

Remove unneeded _new tag.
---
 anaconda-env.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/anaconda-env.yml b/anaconda-env.yml
index d81fa73..3167bea 100644
--- a/anaconda-env.yml
+++ b/anaconda-env.yml
@@ -1,4 +1,4 @@
-name: IPTA_Env_new
+name: IPTA_Env
 channels:
   - conda-forge
   - defaults