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Fmriprep #399
Fmriprep #399
Commits on Feb 9, 2024
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Commits on Feb 20, 2024
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updated csv2nidm to handle case where user supplies -nidm file which …
…metadata gets added to so no need for -out output file. Previously was requiring -out despite one supplying -nidm. Also updated some of the test case data for fmriprep and a run.sh which does the bids2nidm and then the csv2nidm step to add fmriprep results
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Commits on Feb 21, 2024
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working on finding correct session and acquisition entities matching …
…session, run, task information in derived data
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Commits on Feb 28, 2024
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changed BIDS run term...now nidm:run instead of weird mistake coding …
…it as nidm:acquisition_entity
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moved code to find session, task, and run from derivative csv file to…
… separate functions
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Commits on Feb 29, 2024
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Commits on Mar 1, 2024
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working on getting qnames right for derived data...namespace not bein…
…g added...needs to be added with user-defined prefix in Utils/DD_to_nidm function
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Commits on Mar 4, 2024
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fixed problem with derived metadata CDEs not using software metadata …
…title as prefix for namespace and software metadata url as namespace...
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Commits on Mar 5, 2024
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WIP: derivative and software metadata added to NIDM graph. Still prob…
…lems with some urls not written with qnames, visualizer doesn't visualize derivatives so working on that too....
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Commits on Mar 6, 2024
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working version for adding derived data to existing nidm file by link…
…ing subject id, task, run, session. WIP: add derivative info to new NIDM file
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Commits on Mar 11, 2024
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prior version was converting numbers to strings. here we fix this so …
…rdf file has correct types
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Commits on Mar 14, 2024
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working versions of csv2nidm and nidm_visualize for derivative data w…
…ith json data dictionary. Next step, support CSV data dictionary
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Commits on Mar 19, 2024
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Commits on Apr 5, 2024
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Commits on Apr 8, 2024
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fixing up issues with duplicate namespaces for some derivative work a…
…nd also problems when reading nidm files with derivatives
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fixing up namespaces issue when csv2nidm is creating a new nidm file …
…with derivatives
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Commits on Apr 29, 2024
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Commits on May 21, 2024
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fixing bug with missing metadata from agent upon reading nidm to add …
…additional derived data
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fixing up tests after changing project title namespace to dcmitype in…
…stead of dctypes
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Commits on Jun 4, 2024
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