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Migrate from circleci to github actions
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name: CI | ||
|
||
on: | ||
push: | ||
branches: | ||
- main | ||
pull_request: | ||
branches: | ||
- main | ||
|
||
jobs: | ||
pre_commit_check: | ||
name: Pre-Commit Check | ||
runs-on: ubuntu-latest | ||
defaults: | ||
run: | ||
shell: bash -l {0} | ||
env: | ||
BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | ||
steps: | ||
- name: Checkout code | ||
uses: actions/checkout@v4 | ||
- uses: conda-incubator/setup-miniconda@v3 | ||
with: | ||
auto-update-conda: true | ||
auto-activate-base: false | ||
activate-environment: tiktorch-server-env | ||
environment-file: environment.yml | ||
channel-priority: strict | ||
miniforge-variant: Miniforge3 | ||
- name: Run Pre-Commit | ||
run: | | ||
echo $BRANCH_NAME | ||
echo $CI_DEFAULT_BRANCH | ||
echo $CI_COMMIT_SHA | ||
git fetch origin/$BRANCH_NAME | ||
pre-commit run --from-ref origin/$BRANCH_NAME --to-ref $BRANCH_NAME | ||
conda-noarch-build: | ||
runs-on: ubuntu-latest | ||
outputs: | ||
version: ${{ steps.version.outputs.version }} | ||
defaults: | ||
run: | ||
shell: bash -l {0} | ||
steps: | ||
- uses: actions/checkout@v4 | ||
with: | ||
fetch-depth: 0 | ||
- uses: conda-incubator/setup-miniconda@v3 | ||
with: | ||
auto-update-conda: true | ||
auto-activate-base: true | ||
channel-priority: strict | ||
miniforge-variant: Miniforge3 | ||
- name: install common conda dependencies | ||
run: mamba install -n base -c conda-forge conda-build setuptools_scm -y | ||
- name: Cache Conda Packages | ||
uses: actions/cache@v4 | ||
with: | ||
path: | | ||
pkgs/noarch | ||
pkgs/channeldata.json | ||
key: ${{ runner.os }}-packages-${{ hashFiles('conda-recipe/meta.yaml') }} | ||
- id: version | ||
run: | | ||
vers=$( python setup.py --version ) | ||
echo "version=${vers}" >> $GITHUB_OUTPUT | ||
- name: Linux Conda Build Test | ||
run: | | ||
mkdir -p ./pkgs/noarch | ||
conda build -c conda-forge conda-recipe --no-test --output-folder ./pkgs | ||
test-conda-packages: | ||
needs: [conda-noarch-build] | ||
strategy: | ||
fail-fast: false | ||
matrix: | ||
os: [macos-latest, windows-latest, ubuntu-latest] | ||
runs-on: ${{ matrix.os }} | ||
env: | ||
TIKTORCH_PACKAGE_NAME: ${{ needs.conda-noarch-build.outputs.version }}.tar.bz2 | ||
steps: | ||
# Use GNU tar instead of BSD tar on Windows | ||
- name: "Use GNU tar instead of BSD tar" | ||
if: matrix.os == 'windows-latest' | ||
shell: cmd | ||
run: echo C:\Program Files\Git\usr\bin>>"%GITHUB_PATH%" | ||
- name: Checkout code | ||
uses: actions/checkout@v4 | ||
with: | ||
fetch-depth: 0 | ||
- uses: conda-incubator/setup-miniconda@v3 | ||
with: | ||
auto-update-conda: true | ||
auto-activate-base: true | ||
channel-priority: strict | ||
miniforge-variant: Miniforge3 | ||
- name: install common conda dependencies | ||
run: mamba install -n base -c conda-forge conda-build setuptools_scm -y | ||
- name: Cache Conda Packages | ||
uses: actions/cache@v4 | ||
with: | ||
path: | | ||
pkgs/noarch | ||
pkgs/channeldata.json | ||
key: ${{ runner.os }}-packages-${{ hashFiles('conda-recipe/meta.yaml') }} | ||
enableCrossOsArchive: true | ||
- name: Linux Test | ||
if: matrix.os == 'ubuntu-latest' | ||
shell: bash -l {0} | ||
run: | | ||
conda build --test --override-channels \ | ||
-c ./pkgs -c pytorch -c ilastik-forge -c conda-forge \ | ||
./pkgs/noarch/${TIKTORCH_PACKAGE_NAME} | ||
- name: macOS Test | ||
if: matrix.os == 'macos-latest' | ||
shell: bash -l {0} | ||
run: | | ||
conda build --test --override-channels \ | ||
-c ./pkgs -c pytorch -c ilastik-forge -c conda-forge \ | ||
./pkgs/noarch/${TIKTORCH_PACKAGE_NAME} | ||
- name: Windows Test | ||
if: matrix.os == 'windows-latest' | ||
shell: cmd /C CALL {0} | ||
run: | | ||
conda build --test --override-channels ^ | ||
-c .\pkgs -c pytorch -c ilastik-forge -c conda-forge ^ | ||
.\pkgs\noarch\%TIKTORCH_PACKAGE_NAME% |