Decouple server initialization when creating a new process #128
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| pre_commit_check: | |
| name: Pre-Commit Check | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: tiktorch-server-env | |
| environment-file: environment.yml | |
| channel-priority: strict | |
| miniforge-variant: Miniforge3 | |
| - name: Get the latest commit hash and target ref | |
| run: | | |
| echo "COMMIT_HASH=$(git log -1 --format='%H')" >> $GITHUB_ENV | |
| echo "REF=${{ github.event.pull_request.base.ref || github.ref_name }}" >> $GITHUB_ENV | |
| - name: Run Pre-Commit | |
| run: | | |
| echo $REF | |
| echo $COMMIT_HASH | |
| git fetch origin | |
| pre-commit run --from-ref origin/$REF --to-ref $COMMIT_HASH | |
| test-dev: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: tiktorch-server-env | |
| environment-file: environment.yml | |
| channel-priority: strict | |
| miniforge-variant: Miniforge3 | |
| - name: conda diagnostics | |
| run: | | |
| conda list | |
| conda info | |
| - name: install submodules | |
| run: | | |
| git submodule init | |
| git submodule update | |
| make install_submodules | |
| - name: Run tests | |
| run: | | |
| pytest -v -s --cov=tiktorch --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.xml | |
| fail_ci_if_error: true | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| conda-noarch-build: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| version: ${{ steps.version.outputs.version }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| channel-priority: strict | |
| miniforge-variant: Miniforge3 | |
| - name: install common conda dependencies | |
| run: conda install -n base -c conda-forge conda-build setuptools_scm -y | |
| - name: Cache Conda Packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| pkgs/noarch | |
| pkgs/channeldata.json | |
| key: ${{ github.sha }}-packages | |
| - id: version | |
| run: | | |
| vers=$( python setup.py --version ) | |
| echo "version=${vers}" >> $GITHUB_OUTPUT | |
| - name: Linux Conda Build | |
| run: | | |
| mkdir -p ./pkgs/noarch | |
| conda build -c ilastik-forge -c pytorch -c conda-forge \ | |
| conda-recipe --no-test --output-folder ./pkgs | |
| test-build-conda-packages: | |
| needs: [conda-noarch-build] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-latest, windows-latest, ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| TIKTORCH_PACKAGE_NAME: tiktorch-${{ needs.conda-noarch-build.outputs.version }}-py_0.tar.bz2 | |
| steps: | |
| # Use GNU tar instead of BSD tar on Windows | |
| - name: "Use GNU tar instead of BSD tar" | |
| if: matrix.os == 'windows-latest' | |
| shell: cmd | |
| run: echo C:\Program Files\Git\usr\bin>>"%GITHUB_PATH%" | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| channel-priority: strict | |
| miniforge-variant: Miniforge3 | |
| - name: install common conda dependencies | |
| run: conda install -n base -c conda-forge conda-build setuptools_scm -y | |
| - name: Cache Conda Packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| pkgs/noarch | |
| pkgs/channeldata.json | |
| key: ${{ github.sha }}-packages | |
| enableCrossOsArchive: true | |
| - name: Linux Test | |
| if: matrix.os == 'ubuntu-latest' | |
| shell: bash -l {0} | |
| run: | | |
| conda build --test --override-channels \ | |
| -c ./pkgs -c ilastik-forge -c pytorch -c conda-forge \ | |
| ./pkgs/noarch/${TIKTORCH_PACKAGE_NAME} | |
| - name: macOS Test | |
| if: matrix.os == 'macos-latest' | |
| shell: bash -l {0} | |
| run: | | |
| conda build --test --override-channels \ | |
| -c ./pkgs -c ilastik-forge -c pytorch -c conda-forge \ | |
| ./pkgs/noarch/${TIKTORCH_PACKAGE_NAME} | |
| - name: Windows Test | |
| if: matrix.os == 'windows-latest' | |
| # HACK: due to a bug in conda-build need to point to | |
| # libarchive explicitly. | |
| # https://github.com/conda/conda/issues/12563#issuecomment-1494264704 | |
| env: | |
| LIBARCHIVE: C:\Miniconda\Library\bin\archive.dll | |
| shell: cmd /C CALL {0} | |
| run: | | |
| conda build --test --override-channels ^ | |
| -c %CD%\pkgs -c ilastik-forge -c pytorch -c conda-forge ^ | |
| .\pkgs\noarch\%TIKTORCH_PACKAGE_NAME% |