.gitignore

code/UmayCofeedSims.ipynb
code/AcetateBranchSims.ipynb
code/manuel.zip
code/Cosubstrates/
### Source https://github.com/github/gitignore/


## R.gitignore
# History files
.Rhistory
.Rapp.history

# Session Data files
.RData

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron


## Julia.gitignore
# Files generated by invoking Julia with --code-coverage
*.jl.cov
*.jl.*.cov

# Files generated by invoking Julia with --track-allocation
*.jl.mem

# System-specific files and directories generated by the BinaryProvider and BinDeps packages
# They contain absolute paths specific to the host computer, and so should not be committed
deps/deps.jl
deps/build.log
deps/downloads/
deps/usr/
deps/src/

# Build artifacts for creating documentation generated by the Documenter package
docs/build/
docs/site/

# File generated by Pkg, the package manager, based on a corresponding Project.toml
# It records a fixed state of all packages used by the project. As such, it should not be
# committed for packages, but should be committed for applications that require a static
# environment.
Manifest.toml


## Python.gitignore
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

# PEP 582; used by e.g. github.com/David-OConnor/pyflow
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/


## Java.gitignore

# Compiled class file
*.class

# Log file
*.log

# BlueJ files
*.ctxt

# Mobile Tools for Java (J2ME)
.mtj.tmp/

# Package Files #
*.jar
*.war
*.nar
*.ear
*.zip
*.tar.gz
*.rar

# virtual machine crash logs, see http://www.java.com/en/download/help/error_hotspot.xml
hs_err_pid*


### Source https://github.com/jupyter/notebook/blob/master/.gitignore
MANIFEST
build
dist
_build
docs/man/*.gz
docs/source/api/generated
docs/source/config.rst
docs/gh-pages
notebook/i18n/*/LC_MESSAGES/*.mo
notebook/i18n/*/LC_MESSAGES/nbjs.json
notebook/static/components
notebook/static/style/*.min.css*
notebook/static/*/js/built/
notebook/static/*/built/
notebook/static/built/
notebook/static/*/js/main.min.js*
notebook/static/lab/*bundle.js
node_modules
*.py[co]
__pycache__
*.egg-info
*~
*.bak
.ipynb_checkpoints
.tox
.DS_Store
\#*#
.#*
.coverage
.pytest_cache
src

*.swp
*.map
.idea/
Read the Docs
config.rst
*.iml
/.project
/.pydevproject

package-lock.json
geckodriver.log
*.iml


### Source https://github.com/github/gitignore/blob/master/Global/MATLAB.gitignore
# Windows default autosave extension
*.asv

# OSX / *nix default autosave extension
*.m~

# Compiled MEX binaries (all platforms)
*.mex*

# Packaged app and toolbox files
*.mlappinstall
*.mltbx

# Generated helpsearch folders
helpsearch*/

# Simulink code generation folders
slprj/
sccprj/

# Matlab code generation folders
codegen/

# Simulink autosave extension
*.autosave

# Simulink cache files
*.slxc

# Octave session info
octave-workspace


### Misc
.DS_Store