From cc4ed59cb3aa551c256ecc21c988cd0be79a0a6e Mon Sep 17 00:00:00 2001
From: James Eapen <james.eapen@vai.org>
Date: Tue, 3 Dec 2024 11:45:33 -0500
Subject: [PATCH] ci(rhub): install htslib on runners

---
 .github/workflows/rhub.yaml | 15 +++++++++++++++
 1 file changed, 15 insertions(+)

diff --git a/.github/workflows/rhub.yaml b/.github/workflows/rhub.yaml
index 74ec7b0..b1cd895 100644
--- a/.github/workflows/rhub.yaml
+++ b/.github/workflows/rhub.yaml
@@ -60,6 +60,14 @@ jobs:
         with:
           token: ${{ secrets.RHUB_TOKEN }}
           job-config: ${{ matrix.config.job-config }}
+
+      - name: Install deps
+        run: |
+          sudo apt-get install libhts-dev
+          echo "-------------------HTSLIB-----------------------"
+          pkg-config --cflags --libs htslib
+          echo "------------------------------------------------"
+
       - uses: r-hub/actions/run-check@v1
         with:
           token: ${{ secrets.RHUB_TOKEN }}
@@ -89,6 +97,13 @@ jobs:
         with:
           job-config: ${{ matrix.config.job-config }}
           token: ${{ secrets.RHUB_TOKEN }}
+      - name: Install htslib
+        if: ${{ matrix.config.os == 'macos'}}
+        run: |
+          brew install htslib
+          echo "-------------------HTSLIB-----------------------"
+          pkg-config --cflags --libs htslib
+          echo "------------------------------------------------"
       - uses: r-hub/actions/run-check@v1
         with:
           job-config: ${{ matrix.config.job-config }}