From e3546f7be58251fbe7bb5046746147d12a26107a Mon Sep 17 00:00:00 2001 From: Quarto GHA Workflow Runner Date: Mon, 4 Mar 2024 19:43:45 +0000 Subject: [PATCH] Built site for gh-pages --- .nojekyll | 2 +- 404.html | 30 +- about.html | 649 ------------------ index.html | 70 +- install.html | 48 +- methodology.html | 30 +- releases.html | 28 +- search.json | 50 +- site_libs/bootstrap/bootstrap.min.css | 4 +- .../quarto-syntax-highlighting.css | 208 +++--- sitemap.xml | 14 +- usage.html | 199 +++++- 12 files changed, 415 insertions(+), 917 deletions(-) delete mode 100644 about.html diff --git a/.nojekyll b/.nojekyll index 1c3368a..6f8efe3 100644 --- a/.nojekyll +++ b/.nojekyll @@ -1 +1 @@ -fb3f23f8 \ No newline at end of file +c3df5157 \ No newline at end of file diff --git a/404.html b/404.html index f75ac3b..5b02b6b 100644 --- a/404.html +++ b/404.html @@ -126,7 +126,7 @@ - + - -
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About

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About this site

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Dupsifter Documentation

Publication

If you use dupsifter, kindly cite:

-
Jacob Morrison, Wanding Zhou, Benjamin K Johnson, Hui Shen,
-Dupsifter: a lightweight duplicate marking tool for whole genome bisulfite sequencing,
-Bioinformatics, Volume 39, Issue 12, December 2023, btad729,
-https://doi.org/10.1093/bioinformatics/btad729
+
Jacob Morrison, Wanding Zhou, Benjamin K Johnson, Hui Shen,
+Dupsifter: a lightweight duplicate marking tool for whole genome bisulfite sequencing,
+Bioinformatics, Volume 39, Issue 12, December 2023, btad729,
+https://doi.org/10.1093/bioinformatics/btad729

Issues

@@ -652,18 +674,16 @@

Acknowledgments

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Copyright 2024, Jacob Morrison

+

Copyright 2024, The Shen Lab at Van Andel Institute

 
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    Installation

    External Dependencies

    Note, if you plan to use the Docker container or install via conda/mamba you can skip this section as all dependencies are wrapped up in these methods.

    If you plan to compile your own copy of dupsifter or run the pre-compiled binaries, there are several external dependencies that are needed:

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    zlib
-libbz2
-liblzma
-libcurl
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    zlib
+libbz2
+liblzma
+libcurl

    Some helpful tools for retrieving the pre-compiled binaries or the source code from GitHub are:

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    git
-curl
-unzip
    +
    git
+curl
+unzip

    If you are compiling dupsifter yourself, you will also need:

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    gcc
-make
    +
    gcc
+make

    Download and Install

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    Bioconda