From 591f9e7f34c980eece32034ca54501b3a974f063 Mon Sep 17 00:00:00 2001 From: Jacob Morrison Date: Mon, 8 Jan 2024 09:36:16 -0500 Subject: [PATCH] update copyright to 2024 --- lib/aln/align.c | 2 +- lib/aln/bntseq.c | 2 +- lib/aln/bntseq.h | 2 +- lib/aln/bwa.c | 2 +- lib/aln/bwa.h | 2 +- lib/aln/bwamem.c | 2 +- lib/aln/bwamem.h | 2 +- lib/aln/bwt.c | 2 +- lib/aln/bwt.h | 2 +- lib/aln/bwtindex.c | 2 +- lib/aln/mem_alnreg.c | 2 +- lib/aln/mem_alnreg.h | 2 +- lib/aln/mem_alnreg_format.c | 2 +- lib/aln/mem_pair.c | 2 +- lib/aln/memchain.c | 2 +- lib/aln/memchain.h | 2 +- lib/aln/utils.c | 2 +- lib/aln/utils.h | 2 +- src/asm_pairwise.c | 2 +- src/bamfilter.c | 2 +- src/bamfilter.h | 2 +- src/bc.c | 2 +- src/bc.h | 2 +- src/bisc_utils.c | 2 +- src/bisc_utils.h | 2 +- src/biscuit.h | 2 +- src/bsconv.c | 2 +- src/bsconv.h | 2 +- src/bsstrand.c | 2 +- src/bsstrand.h | 2 +- src/cinread.c | 2 +- src/cinread.h | 2 +- src/epiread.c | 2 +- src/epiread.h | 2 +- src/epiread_rectangle.c | 2 +- src/main.c | 2 +- src/mergecg.c | 2 +- src/pileup.c | 2 +- src/pileup.h | 2 +- src/qc.c | 2 +- src/qc.h | 2 +- src/refcache.h | 2 +- src/tview.c | 2 +- src/vcf2bed.c | 2 +- 44 files changed, 44 insertions(+), 44 deletions(-) diff --git a/lib/aln/align.c b/lib/aln/align.c index ab75068..68f6eec 100644 --- a/lib/aln/align.c +++ b/lib/aln/align.c @@ -1,7 +1,7 @@ /* entry point for alignment * * Newly added copyright in 2022 - * Copyright (c) 2022-2023 Jacob.Morrison@vai.org + * Copyright (c) 2022-2024 Jacob.Morrison@vai.org * * The MIT License * diff --git a/lib/aln/bntseq.c b/lib/aln/bntseq.c index fe4cd70..e5153ce 100755 --- a/lib/aln/bntseq.c +++ b/lib/aln/bntseq.c @@ -2,7 +2,7 @@ Copyright (c) 2008 Genome Research Ltd (GRL). 2016-2020 Wanding.Zhou@vai.org - 2021-2023 Jacob.Morrison@vai.org + 2021-2024 Jacob.Morrison@vai.org Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the diff --git a/lib/aln/bntseq.h b/lib/aln/bntseq.h index 286efce..8ca1e0d 100644 --- a/lib/aln/bntseq.h +++ b/lib/aln/bntseq.h @@ -1,7 +1,7 @@ /* The MIT License Copyright (c) 2008 Genome Research Ltd (GRL). - 2022-2023 Jacob.Morrison@vai.org + 2022-2024 Jacob.Morrison@vai.org Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the diff --git a/lib/aln/bwa.c b/lib/aln/bwa.c index 2eb7a81..ada7e64 100644 --- a/lib/aln/bwa.c +++ b/lib/aln/bwa.c @@ -1,7 +1,7 @@ /* bwa alignment base * * Newly added copyright in 2022 - * Copyright (c) 2022-2023 Jacob.Morrison@vai.org + * Copyright (c) 2022-2024 Jacob.Morrison@vai.org * * The MIT License * diff --git a/lib/aln/bwa.h b/lib/aln/bwa.h index b59194c..ddc2bc3 100644 --- a/lib/aln/bwa.h +++ b/lib/aln/bwa.h @@ -1,7 +1,7 @@ /* bwa alignment base * * Newly added copyright in 2022 - * Copyright (c) 2022-2023 Jacob.Morrison@vai.org + * Copyright (c) 2022-2024 Jacob.Morrison@vai.org * * The MIT License * diff --git a/lib/aln/bwamem.c b/lib/aln/bwamem.c index 48789d7..d7e3dad 100755 --- a/lib/aln/bwamem.c +++ b/lib/aln/bwamem.c @@ -1,7 +1,7 @@ /* bwamem algorithm * * Newly added copyright in 2022 - * Copyright (c) 2022-2023 Jacob.Morrison@vai.org + * Copyright (c) 2022-2024 Jacob.Morrison@vai.org * * The MIT License * diff --git a/lib/aln/bwamem.h b/lib/aln/bwamem.h index 07e3276..e0ac4db 100755 --- a/lib/aln/bwamem.h +++ b/lib/aln/bwamem.h @@ -1,7 +1,7 @@ /* bwamem algorithm * * Newly added copyright in 2022 - * Copyright (c) 2022-2023 Jacob.Morrison@vai.org + * Copyright (c) 2022-2024 Jacob.Morrison@vai.org * * The MIT License * diff --git a/lib/aln/bwt.c b/lib/aln/bwt.c index 414a29f..af33ec3 100644 --- a/lib/aln/bwt.c +++ b/lib/aln/bwt.c @@ -1,7 +1,7 @@ /* The MIT License Copyright (c) 2008 Genome Research Ltd (GRL). - 2022-2023 Jacob.Morrison@vai.org + 2022-2024 Jacob.Morrison@vai.org Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the diff --git a/lib/aln/bwt.h b/lib/aln/bwt.h index b78d602..f3abea3 100755 --- a/lib/aln/bwt.h +++ b/lib/aln/bwt.h @@ -1,7 +1,7 @@ /* The MIT License Copyright (c) 2008 Genome Research Ltd (GRL). - 2022-2023 Jacob.Morrison@vai.org + 2022-2024 Jacob.Morrison@vai.org Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the diff --git a/lib/aln/bwtindex.c b/lib/aln/bwtindex.c index 2b7126d..ad7e190 100644 --- a/lib/aln/bwtindex.c +++ b/lib/aln/bwtindex.c @@ -1,7 +1,7 @@ /* The MIT License Copyright (c) 2008 Genome Research Ltd (GRL). - 2022-2023 Jacob.Morrison@vai.org + 2022-2024 Jacob.Morrison@vai.org Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the diff --git a/lib/aln/mem_alnreg.c b/lib/aln/mem_alnreg.c index 1072500..79e36a1 100644 --- a/lib/aln/mem_alnreg.c +++ b/lib/aln/mem_alnreg.c @@ -2,7 +2,7 @@ * * Copyright (c) 2007-2014 Attractive Chaos * 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/lib/aln/mem_alnreg.h b/lib/aln/mem_alnreg.h index 0c9b914..a95c643 100644 --- a/lib/aln/mem_alnreg.h +++ b/lib/aln/mem_alnreg.h @@ -1,7 +1,7 @@ /* The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/lib/aln/mem_alnreg_format.c b/lib/aln/mem_alnreg_format.c index 281014e..dff283f 100644 --- a/lib/aln/mem_alnreg_format.c +++ b/lib/aln/mem_alnreg_format.c @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/lib/aln/mem_pair.c b/lib/aln/mem_pair.c index 63998ad..05633e4 100644 --- a/lib/aln/mem_pair.c +++ b/lib/aln/mem_pair.c @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/lib/aln/memchain.c b/lib/aln/memchain.c index 673870d..55a697d 100755 --- a/lib/aln/memchain.c +++ b/lib/aln/memchain.c @@ -2,7 +2,7 @@ * * Copyright (c) 2007-2014 Attractive Chaos * 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/lib/aln/memchain.h b/lib/aln/memchain.h index a1b9aa0..1c10a1d 100644 --- a/lib/aln/memchain.h +++ b/lib/aln/memchain.h @@ -1,7 +1,7 @@ /* The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/lib/aln/utils.c b/lib/aln/utils.c index cf6fcc3..fe60c27 100644 --- a/lib/aln/utils.c +++ b/lib/aln/utils.c @@ -1,7 +1,7 @@ /* The MIT License Copyright (c) 2008 Genome Research Ltd (GRL). - 2022-2023 Jacob.Morrison@vai.org + 2022-2024 Jacob.Morrison@vai.org Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the diff --git a/lib/aln/utils.h b/lib/aln/utils.h index 233b319..0786fbc 100644 --- a/lib/aln/utils.h +++ b/lib/aln/utils.h @@ -1,7 +1,7 @@ /* The MIT License Copyright (c) 2008 Genome Research Ltd (GRL). - 2022-2023 Jacob.Morrison@vai.org + 2022-2024 Jacob.Morrison@vai.org Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the diff --git a/src/asm_pairwise.c b/src/asm_pairwise.c index d909c0c..da0f0a7 100644 --- a/src/asm_pairwise.c +++ b/src/asm_pairwise.c @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/bamfilter.c b/src/bamfilter.c index b264103..bb61882 100644 --- a/src/bamfilter.c +++ b/src/bamfilter.c @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/bamfilter.h b/src/bamfilter.h index f007d5f..601c263 100644 --- a/src/bamfilter.h +++ b/src/bamfilter.h @@ -2,7 +2,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/bc.c b/src/bc.c index 04d0eff..d85125a 100644 --- a/src/bc.c +++ b/src/bc.c @@ -2,7 +2,7 @@ * * The MIT License (MIT) * - * Copyright (c) 2023 Jacob.Morrison@vai.org + * Copyright (c) 2023-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/bc.h b/src/bc.h index 416563e..1d54c8a 100644 --- a/src/bc.h +++ b/src/bc.h @@ -2,7 +2,7 @@ * * The MIT License (MIT) * - * Copyright (c) 2023 Jacob.Morrison@vai.org + * Copyright (c) 2023-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/bisc_utils.c b/src/bisc_utils.c index e865f15..d27f5b2 100644 --- a/src/bisc_utils.c +++ b/src/bisc_utils.c @@ -2,7 +2,7 @@ * * The MIT License (MIT) * - * Copyright (c) 2023 Jacob.Morrison@vai.org + * Copyright (c) 2023-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/bisc_utils.h b/src/bisc_utils.h index 431699f..66a046f 100644 --- a/src/bisc_utils.h +++ b/src/bisc_utils.h @@ -2,7 +2,7 @@ * * The MIT License (MIT) * - * Copyright (c) 2023 Jacob.Morrison@vai.org + * Copyright (c) 2023-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/biscuit.h b/src/biscuit.h index 8cb040f..009ad61 100644 --- a/src/biscuit.h +++ b/src/biscuit.h @@ -1,7 +1,7 @@ /* biscuit.h * * The MIT License (MIT) - * Copyright (c) 2023 Jacob.Morrison@vai.org + * Copyright (c) 2023-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/bsconv.c b/src/bsconv.c index 3f97a05..860ae0f 100644 --- a/src/bsconv.c +++ b/src/bsconv.c @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/bsconv.h b/src/bsconv.h index 8dcc581..139683c 100644 --- a/src/bsconv.h +++ b/src/bsconv.h @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/bsstrand.c b/src/bsstrand.c index d3f32e1..c617f51 100755 --- a/src/bsstrand.c +++ b/src/bsstrand.c @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/bsstrand.h b/src/bsstrand.h index 672d8cf..58bedb3 100644 --- a/src/bsstrand.h +++ b/src/bsstrand.h @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/cinread.c b/src/cinread.c index 230b69e..f2ffa32 100644 --- a/src/cinread.c +++ b/src/cinread.c @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/cinread.h b/src/cinread.h index 1d8b66b..d105fd5 100644 --- a/src/cinread.h +++ b/src/cinread.h @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/epiread.c b/src/epiread.c index fe6df4a..f95c800 100644 --- a/src/epiread.c +++ b/src/epiread.c @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/epiread.h b/src/epiread.h index 465ae0b..afd2fca 100644 --- a/src/epiread.h +++ b/src/epiread.h @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/epiread_rectangle.c b/src/epiread_rectangle.c index 42bb8e6..ada4674 100644 --- a/src/epiread_rectangle.c +++ b/src/epiread_rectangle.c @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/main.c b/src/main.c index 39d7d0d..90d4803 100644 --- a/src/main.c +++ b/src/main.c @@ -2,7 +2,7 @@ * * The MIT License (MIT) * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/mergecg.c b/src/mergecg.c index ba68f48..e1f534a 100644 --- a/src/mergecg.c +++ b/src/mergecg.c @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/pileup.c b/src/pileup.c index fe3085d..aef6035 100644 --- a/src/pileup.c +++ b/src/pileup.c @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/pileup.h b/src/pileup.h index 7e88fdf..548d71b 100644 --- a/src/pileup.h +++ b/src/pileup.h @@ -2,7 +2,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/qc.c b/src/qc.c index 31c1f50..f2cf342 100644 --- a/src/qc.c +++ b/src/qc.c @@ -2,7 +2,7 @@ * * The MIT License (MIT) * - * Copyright (c) 2021-2023 Jacob.Morrison@vai.org + * Copyright (c) 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/qc.h b/src/qc.h index 37aa380..3af0403 100644 --- a/src/qc.h +++ b/src/qc.h @@ -2,7 +2,7 @@ * * The MIT License (MIT) * - * Copyright (c) 2021-2023 Jacob.Morrison@vai.org + * Copyright (c) 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/refcache.h b/src/refcache.h index 97bd7e7..9edfafb 100755 --- a/src/refcache.h +++ b/src/refcache.h @@ -2,7 +2,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/tview.c b/src/tview.c index 16870c3..10c0018 100644 --- a/src/tview.c +++ b/src/tview.c @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal diff --git a/src/vcf2bed.c b/src/vcf2bed.c index b5dcdaf..02badb8 100644 --- a/src/vcf2bed.c +++ b/src/vcf2bed.c @@ -3,7 +3,7 @@ * The MIT License (MIT) * * Copyright (c) 2016-2020 Wanding.Zhou@vai.org - * 2021-2023 Jacob.Morrison@vai.org + * 2021-2024 Jacob.Morrison@vai.org * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal