Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Documentation of Donor metadata and examples of how to query #866

Open
shirey opened this issue Aug 29, 2024 · 0 comments
Open

Documentation of Donor metadata and examples of how to query #866

shirey opened this issue Aug 29, 2024 · 0 comments
Assignees

Comments

@shirey
Copy link
Member

shirey commented Aug 29, 2024

Create a page of documentation explaining how Donor Metadata is stored using ontology terms/concepts including a separate page (maybe pages?) of reference for the various ontology pieces that we use from the Donor metadata valuesets spreadsheet for Race, Ethnicity, Age, Sex, Measurements, Cause of Death, Mechanism of Injury, Death Event, Blood Type, Medical History and Social History. (Need to include a Note/Warning that we mainly have Race, Ethnicity, Age and Sex information for Donors and other data is sparse.)

Also, create a Jupyter notebook with some example queries using both the /param-search and search endpoints. Link the Jupyter notebook from this new page of documentation. (Store the Jupyter notebook in GitHub at https://github.com/hubmapconsortium/search-api/tree/main/examples where other Jupyter search examples exist and link directly into GitHub.)

@shirey shirey added this to Pitt HIVE Aug 29, 2024
@shirey shirey converted this from a draft issue Aug 29, 2024
@shirey shirey self-assigned this Sep 3, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
Status: Ready
Development

No branches or pull requests

1 participant