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Develop Snakefile on a node #34

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tkphd opened this issue Apr 6, 2023 · 0 comments
Open

Develop Snakefile on a node #34

tkphd opened this issue Apr 6, 2023 · 0 comments

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@tkphd
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tkphd commented Apr 6, 2023

We can start developing the Snakefile on a compute node (srun --pty bash) using 1 core, then when a user's Snakefile uses more than 1 core, the workflow manager will kill their session for grabbing more than was allocated. This becomes an HPC & shared resource lesson, and marks the turning point between live development of the script and launching it through the head node. Hat tip @tobyhodges

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