Error installing optitype

[ihodes]

Old version of CMake:

#=== ERROR while installing seqan.2.1.0 =======================================#
# opam-version         1.2.2
# os                   linux
# command              sh compile.sh
# path                 /demeter/users/hodesi01/pgv-results/biopam/opam_dir/.opam/0.0.0/build/seqan.2.1.0
# compiler             0.0.0
# exit-code            1
# env-file             /demeter/users/hodesi01/pgv-results/biopam/opam_dir/.opam/0.0.0/build/seqan.2.1.0/seqan-24474-0a5907.env
# stdout-file          /demeter/users/hodesi01/pgv-results/biopam/opam_dir/.opam/0.0.0/build/seqan.2.1.0/seqan-24474-0a5907.out
# stderr-file          /demeter/users/hodesi01/pgv-results/biopam/opam_dir/.opam/0.0.0/build/seqan.2.1.0/seqan-24474-0a5907.err
### stdout ###
# -- The CXX compiler identification is GNU 4.8.5
# -- Check for working CXX compiler: /bin/c++
# -- Check for working CXX compiler: /bin/c++ -- works
# -- Detecting CXX compiler ABI info
# -- Detecting CXX compiler ABI info - done
# -- Configuring incomplete, errors occurred!
### stderr ###
# CMake Error at CMakeLists.txt:16 (cmake_minimum_required):
#   CMake 3.0.0 or higher is required.  You are running version 2.8.11
# 
# 

[smondet]

This isn't a Biokepi issue, is it?

I reported this a while ago: biocaml/biopam#27

[ihodes]

Seems like an issue in Biokepi if Biokepi can't install it but allegedly does?

[smondet]

The question is "Is biokepi's job to install system packages"?

I got cmake from sources, and the Optitype from biopam/biokepi worked for me.

[ihodes]

Fair point; I agree.

We should, then, make it clear which "system packages" are expected, especially if they're, like CMake, not really system packages.

[ihodes]

I'll close this; once a recent version of cmake was on my path, optitype installed.