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GSM7734233_GDZ-13-SOX2.mm10.hisat2.sorted.brm.bam.default.s180.minDist400FDR00001.v-.bed
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GSM7734233_GDZ-13-SOX2.mm10.hisat2.sorted.brm.bam.default.s180.minDist400FDR00001.v-.bed
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track name="GDZ-13-SOX2.mm10.hisat2.sorted.brm.bam.default.s180.minDist400FDR00001.v-peaks.txt"
# HOMER Peaks
# Peak finding parameters:
# tag directory = GDZ-13-SOX2.mm10.hisat2.sorted.brm.bam.default-homer-tags/
#
# total peaks = 6745
# peak size = 180
# peaks found using tags on both strands
# minimum distance between peaks = 400
# fragment length = 162
# genome size = 2000000000
# Total tags = 12642679.0
# Total tags in peaks = 234518.0
# Approximate IP efficiency = 1.85%
# tags per bp = 0.005970
# expected tags per peak = 1.075
# maximum tags considered per bp = 1.0
# effective number of tags used for normalization = 10000000.0
# Individual peaks have been stitched together into variable length regions
# FDR rate threshold = 0.000010000
# FDR effective poisson threshold = 1.513382e-10
# FDR tag threshold = 13.0
# number of putative peaks = 19551
#
# input tag directory = /mnt/fire/projects/nicky/MALB21L2/ChIP/2011-05-14_GDZ-9-13_sequences/GDZ-09-IgG.mm10.hisat2.sorted.brm.bam.default-homer-tags
# Fold over input required = 4.00
# Poisson p-value over input required = 1.00e-04
# Putative peaks filtered by input = 4
#
# size of region used for local filtering = 10000
# Fold over local region required = 4.00
# Poisson p-value over local region required = 1.00e-04
# Putative peaks filtered by local signal = 269
#
# Maximum fold under expected unique positions for tags = 2.00
# Putative peaks filtered for being too clonal = 1
#
# cmd = findPeaks GDZ-13-SOX2.mm10.hisat2.sorted.brm.bam.default-homer-tags/ -region -size 180 -minDist 400 -fdr .00001 -o GDZ-13-SOX2.mm10.hisat2.sorted.brm.bam.default-homer-tags/GDZ-13-SOX2.mm10.hisat2.sorted.brm.bam.default.s180.minDist400FDR00001.v-peaks.txt -i /mnt/fire/projects/nicky/MALB21L2/ChIP/2011-05-14_GDZ-9-13_sequences/GDZ-09-IgG.mm10.hisat2.sorted.brm.bam.default-homer-tags
#
# Column Headers:
#PeakID chr start end strand Normalized Tag Count region size findPeaks Score Total Tags (normalized to Control Experiment) Control Tags Fold Change vs Control p-value vs Control Fold Change vs Local p-value vs Local Clonal Fold Change
chr3 122145362 122145874 chr3-26 1 +
chr13 66711021 66711435 chr13-2 1 +
chr1 11277687 11278316 chr1-1092 1 +
chr1 133397577 133398085 chr1-552 1 +
chr14 122416274 122416886 chr14-107 1 +
chr4 33823758 33824344 chr4-858 1 +
chr1 119305293 119305972 chr1-393 1 +
chr1 74824816 74825397 chr1-540 1 +
chr6 149130957 149131524 chr6-298 1 +
chr12 35642317 35642981 chr12-246 1 +
chr1 88668355 88669322 chr1-906 1 +
chr6 122340447 122340986 chr6-176 1 +
chr10 25029316 25029811 chr10-364 1 +
chr1 36985752 36986270 chr1-954 1 +
chr5 16968742 16969317 chr5-437 1 +
chr2 52072002 52072521 chr2-385 1 +
chr10 116562239 116562647 chr10-6 1 +
chr5 129632524 129633553 chr5-425 1 +
chr1 136674620 136675314 chr1-730 1 +
chr1 86310803 86311415 chr1-434 1 +
chr10 76067588 76068076 chr10-759 1 +
chr4 124441761 124442285 chr4-285 1 +
chr7 80746313 80746831 chr7-251 1 +
chr14 86395970 86396462 chr14-486 1 +
chr10 21101892 21102419 chr10-162 1 +
chr1 180924652 180925225 chr1-1836 1 +
chr3 103207685 103208307 chr3-691 1 +
chr5 119055394 119055859 chr5-180 1 +
chr12 117235133 117235609 chr12-282 1 +
chr1 107978351 107978997 chr1-717 1 +
chr7 63957008 63957524 chr7-394 1 +
chr1 101756573 101757594 chr1-991 1 +
chr9 58279239 58279818 chr9-194 1 +
chr10 3891710 3892272 chr10-299 1 +
chr13 63979449 63980551 chr13-468 1 +
chr1 11395365 11396374 chr1-1862 1 +
chr1 12744483 12745338 chr1-1096 1 +
chr6 39445789 39446454 chr6-182 1 +
chr1 101918816 101919403 chr1-192 1 +
chr3 108433401 108433939 chr3-323 1 +
chr3 34653804 34654279 chr3-605 1 +
chr16 42781914 42782465 chr16-204 1 +
chr2 20669142 20669707 chr2-838 1 +
chr10 15263144 15263762 chr10-451 1 +
chr18 30121545 30122058 chr18-284 1 +
chr7 41581994 41582511 chr7-265 1 +
chr19 10972577 10973170 chr19-131 1 +
chr17 66479729 66480250 chr17-176 1 +
chr1 105012547 105013556 chr1-1981 1 +
chr2 25180442 25180920 chr2-523 1 +
chr8 89003472 89003952 chr8-193 1 +
chr13 57362483 57363022 chr13-642 1 +
chr4 141565390 141565889 chr4-106 1 +
chr1 113959257 113959661 chr1-720 1 +
chr12 4358612 4359206 chr12-366 1 +
chr14 53577003 53577500 chr14-112 1 +
chr17 37078894 37079354 chr17-216 1 +
chr1 54484651 54485413 chr1-1040 1 +
chr3 87974196 87974725 chr3-772 1 +
chr17 15208146 15208557 chr17-18 1 +
chr13 16830264 16830806 chr13-310 1 +
chr1 59448411 59449274 chr1-1042 1 +
chr6 51766409 51766994 chr6-565 1 +
chr6 94750596 94750991 chr6-79 1 +
chr19 17138116 17138533 chr19-33 1 +
chr1 3482785 3483308 chr1-1084 1 +
chr16 30646101 30646580 chr16-236 1 +
chr2 81848800 81849282 chr2-321 1 +
chr4 91447860 91448273 chr4-229 1 +
chr4 126465717 126466208 chr4-644 1 +
chr6 144454333 144454843 chr6-672 1 +
chr8 23561946 23562434 chr8-105 1 +
chr15 91077989 91078426 chr15-73 1 +
chr3 64321802 64322332 chr3-178 1 +
chr17 13658612 13659150 chr17-164 1 +
chr9 115723979 115724498 chr9-743 1 +
chr5 8488810 8489303 chr5-223 1 +
chr6 54096225 54097296 chr6-70 1 +
chr2 20496297 20496727 chr2-145 1 +
chr3 72858638 72859148 chr3-210 1 +
chr10 85539406 85540063 chr10-478 1 +
chr10 90709439 90709982 chr10-292 1 +
chr19 12199046 12199590 chr19-148 1 +
chr1 80237310 80237876 chr1-1129 1 +
chr2 45736272 45736717 chr2-443 1 +
chr11 77893799 77894329 chr11-439 1 +
chr14 8736716 8737229 chr14-619 1 +
chr3 7682661 7683245 chr3-258 1 +
chr9 120149332 120149727 chr9-221 1 +
chr1 8557850 8558319 chr1-1021 1 +
chr1 78119912 78120342 chr1-273 1 +
chr1 22466697 22467107 chr1-45 1 +
chr5 115464749 115465176 chr5-553 1 +
chr17 31057100 31057646 chr17-476 1 +
chr2 44525212 44525869 chr2-351 1 +
chr7 49347824 49348301 chr7-723 1 +
chr8 89271591 89272162 chr8-712 1 +
chr14 49447688 49448149 chr14-40 1 +
chr11 34738871 34739381 chr11-299 1 +
chr12 62707083 62707692 chr12-312 1 +
chr11 52286287 52286805 chr11-719 1 +
chr16 26961985 26962465 chr16-134 1 +
chr12 44640510 44641010 chr12-292 1 +
chr3 18623903 18624492 chr3-1021 1 +
chr7 3347939 3348400 chr7-258 1 +
chr4 119026320 119026914 chr4-377 1 +
chr15 39728673 39729165 chr15-427 1 +
chr1 133492446 133492953 chr1-854 1 +
chr2 171879054 171879672 chr2-1156 1 +
chr7 133759956 133760447 chr7-375 1 +
chr9 99770682 99771179 chr9-642 1 +
chr13 26113550 26114152 chr13-509 1 +
chr13 51920545 51921266 chr13-464 1 +
chr1 72229117 72229435 chr1-25 1 +
chr2 170772057 170772565 chr2-471 1 +
chr12 28817374 28817846 chr12-116 1 +
chr8 90670623 90671148 chr8-420 1 +
chr12 12177323 12177867 chr12-447 1 +
chr14 34359859 34360288 chr14-349 1 +
chr16 23504283 23504829 chr16-373 1 +
chr12 27151082 27151623 chr12-242 1 +
chr6 65797301 65797667 chr6-55 1 +
chr1 5227814 5228299 chr1-936 1 +
chr10 11801649 11802209 chr10-276 1 +
chr11 80335634 80336216 chr11-741 1 +
chr16 72072009 72072515 chr16-475 1 +
chr18 31568749 31569240 chr18-79 1 +
chr2 104220024 104220525 chr2-878 1 +
chr5 26703646 26704150 chr5-485 1 +
chr6 148992291 148992767 chr6-345 1 +
chr7 24879547 24880022 chr7-217 1 +
chr1 4150714 4151249 chr1-1667 1 +
chr1 47076419 47076854 chr1-244 1 +
chr3 97159491 97159867 chr3-47 1 +
chr6 117881183 117881806 chr6-496 1 +
chr13 30069366 30069761 chr13-510 1 +
chr13 44018766 44019141 chr13-146 1 +
chr14 78288899 78289457 chr14-419 1 +
chr16 13977040 13977513 chr16-125 1 +
chr18 31248147 31248511 chr18-3 1 +
chr1 132200767 132201244 chr1-1002 1 +
chr9 3987965 3988564 chr9-369 1 +
chr3 83787080 83787519 chr3-861 1 +
chr10 21746081 21746492 chr10-49 1 +
chr1 53749935 53750384 chr1-961 1 +
chr13 90245941 90246542 chr13-530 1 +
chr19 9940896 9941396 chr19-359 1 +
chr8 92216346 92216767 chr8-29 1 +
chr2 146920746 146921545 chr2-723 1 +
chr3 60106442 60106992 chr3-567 1 +
chr5 142129883 142130449 chr5-1092 1 +
chr9 8769996 8770416 chr9-186 1 +
chr15 91864052 91864549 chr15-133 1 +
chr1 133493334 133493769 chr1-1160 1 +
chr1 180933648 180934120 chr1-870 1 +
chr6 145275884 145276746 chr6-272 1 +
chr7 52732092 52732640 chr7-448 1 +
chr7 70591615 70592104 chr7-450 1 +
chr17 35503832 35504302 chr17-166 1 +
chr1 135507666 135508184 chr1-1817 1 +
chr2 15925447 15926414 chr2-1174 1 +
chr5 92112274 92113086 chr5-1184 1 +
chr6 34187549 34187964 chr6-394 1 +
chr6 122624401 122624908 chr6-539 1 +
chr10 33375499 33376083 chr10-425 1 +
chr18 38148875 38149193 chr18-4 1 +
chr3 16941181 16941712 chr3-596 1 +
chr5 116591741 116592251 chr5-1063 1 +
chr7 60006172 60006725 chr7-632 1 +
chr4 119071375 119072135 chr4-574 1 +
chr17 48616196 48616725 chr17-278 1 +
chr1 77461702 77462207 chr1-1055 1 +
chr17 53561568 53562093 chr17-259 1 +
chr3 157320999 157321580 chr3-1005 1 +
chr4 110312049 110312581 chr4-569 1 +
chr6 72787375 72787752 chr6-148 1 +
chr1 7125998 7126436 chr1-352 1 +
chr2 147292858 147293354 chr2-547 1 +
chr7 3586177 3586645 chr7-889 1 +
chr7 107236858 107237349 chr7-510 1 +
chr8 47726779 47727219 chr8-365 1 +
chr14 15978400 15978765 chr14-17 1 +
chr17 70772442 70773021 chr17-558 1 +
chr1 133667635 133668070 chr1-855 1 +
chr4 84528290 84528833 chr4-782 1 +
chr10 36611410 36611846 chr10-344 1 +
chr17 29187181 29187604 chr17-228 1 +
chr1 5232803 5233243 chr1-1291 1 +
chr1 136570267 136570708 chr1-1269 1 +
chr5 108076973 108077473 chr5-121 1 +
chr7 80745441 80745766 chr7-29 1 +
chr10 130419886 130420405 chr10-560 1 +
chr1 113964013 113964711 chr1-1145 1 +
chr2 40910855 40911361 chr2-571 1 +
chr5 67633128 67633747 chr5-407 1 +
chr7 73400224 73400593 chr7-140 1 +
chr11 30491897 30492361 chr11-63 1 +
chr16 13748741 13749169 chr16-88 1 +
chr3 31089366 31089755 chr3-389 1 +
chr5 4303512 4303981 chr5-517 1 +
chr6 83890295 83890752 chr6-718 1 +
chr17 11962730 11963157 chr17-196 1 +
chr17 15380516 15381060 chr17-426 1 +
chr19 26608471 26608811 chr19-34 1 +
chr1 128392339 128392802 chr1-550 1 +
chr4 45815478 45815975 chr4-610 1 +
chr7 35530509 35530953 chr7-620 1 +
chr5 74952936 74953350 chr5-533 1 +
chr18 11486804 11487289 chr18-242 1 +
chr15 84622040 84622508 chr15-122 1 +
chr16 90437228 90437737 chr16-600 1 +
chr1 110790594 110791061 chr1-914 1 +
chr3 17787179 17787601 chr3-99 1 +
chr8 81893198 81893785 chr8-813 1 +
chr16 78265170 78265582 chr16-222 1 +
chr1 62181649 62182224 chr1-965 1 +
chr1 126129234 126129598 chr1-40 1 +
chr18 47492821 47493272 chr18-406 1 +
chr4 66330561 66331003 chr4-692 1 +
chr5 148175652 148176130 chr5-570 1 +
chr11 13005251 13005951 chr11-291 1 +
chr12 66591679 66592227 chr12-469 1 +
chr15 55267993 55268481 chr15-388 1 +
chr2 29820334 29820869 chr2-847 1 +
chr10 95220583 95220968 chr10-54 1 +
chr10 109521700 109522147 chr10-620 1 +
chr11 102329550 102329937 chr11-110 1 +
chr12 65593641 65594071 chr12-92 1 +
chr1 120643938 120644771 chr1-350 1 +
chr3 88281465 88282085 chr3-774 1 +
chr11 112811046 112811517 chr11-773 1 +
chr14 60957711 60958250 chr14-203 1 +
chr2 17989070 17989484 chr2-219 1 +
chr3 11211118 11211824 chr3-329 1 +
chr3 131102160 131102637 chr3-1092 1 +
chr12 12580865 12581309 chr12-207 1 +
chr12 109948263 109948706 chr12-178 1 +
chr13 14290045 14290376 chr13-100 1 +
chr1 84217760 84218180 chr1-577 1 +
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