New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Interesting questions #4

Open

mbelmadani opened this issue Sep 10, 2016 · 0 comments

Labels

help wanted question

Contributor

mbelmadani commented Sep 10, 2016 •

edited

Loading

It would be nice to come up with interesting datasets and motifs which could be used to answer some kind of biological question.

For example, provide a dataset from ENCODE or a combination of motifs that would be useful to investigate a given a biological question. I would be interested in looking at the binding sequence for the same TF across different tissues of the same organism, but I'm not sure yet what would be good datasets for this. You can start looking at some ENCODE datasets (https://www.encodeproject.org/search/?type=Experiment&files.analysis_step_version.analysis_step.pipelines.title=Transcription+factor+ChIP-seq0) or motif databases (http://meme-suite.org/db/motifs) for some inspiration.

mbelmadani added help wanted question labels

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment