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@guigolab

Guigo Lab

Computational Biology of RNA Processing

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  1. ggsashimi ggsashimi Public

    Command-line tool for the visualization of splicing events across multiple samples

    Python 122 42

  2. grape-nf grape-nf Public

    An automated RNA-seq pipeline using Nextflow

    Nextflow 37 10

  3. geneid geneid Public

    Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences

    C 17 6

  4. FA-nf FA-nf Public

    Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow

    Perl 17 4

  5. sqtlseeker2-nf sqtlseeker2-nf Public

    An automated sQTL mapping pipeline using Nextflow

    R 6 4

  6. biogenome-portal biogenome-portal Public

    Biogenome data portal

    Vue 6 2

Repositories

Showing 10 of 51 repositories
  • biogenome-portal Public

    Biogenome data portal

    guigolab/biogenome-portal’s past year of commit activity
    Vue 6 MIT 2 0 0 Updated Nov 29, 2024
  • LyRic Public

    Long RNA-seq analysis workflow

    guigolab/LyRic’s past year of commit activity
    Python 14 GPL-3.0 4 6 1 Updated Nov 28, 2024
  • CLS3_GENCODE Public

    Charting thousands of novel gene loci in the human and mouse genomes through targeted full-length long-read RNA sequencing

    guigolab/CLS3_GENCODE’s past year of commit activity
    R 1 1 0 0 Updated Nov 25, 2024
  • genome-annotation-tracker Public

    Tracks Eukaryotic genome annotations (gff) from NCBI and Ensembl

    guigolab/genome-annotation-tracker’s past year of commit activity
    0 0 0 0 Updated Nov 25, 2024
  • bioproject-genome-tracker Public

    Retrieve all the INSDC public assemblies under a BioProject umbrella

    guigolab/bioproject-genome-tracker’s past year of commit activity
    0 MIT 2 0 0 Updated Nov 24, 2024
  • gff2ps Public

    A program for visualizing annotations of genomic sequences

    guigolab/gff2ps’s past year of commit activity
    Vue 0 0 0 0 Updated Oct 25, 2024
  • rnaseq-course Public

    Data for the RNAseq course at CRG

    guigolab/rnaseq-course’s past year of commit activity
    0 1 0 0 Updated Oct 24, 2024
  • guigolab/cls3-final-files-description’s past year of commit activity
    0 0 0 0 Updated Oct 15, 2024
  • rnaget-beacon-demo Public

    Demo of the RNAget extension for BeaconV2

    guigolab/rnaget-beacon-demo’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 2, 2024
  • grape-nf Public

    An automated RNA-seq pipeline using Nextflow

    guigolab/grape-nf’s past year of commit activity
    Nextflow 37 GPL-3.0 10 31 1 Updated Sep 21, 2024

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