install.sh

#!/bin/bash
# Copyright (c) 2021, Google Inc.
# All rights reserved.
# 
# Redistribution and use in source and binary forms, with or without modification,
# are permitted provided that the following conditions are met:
# 
# 1. Redistributions of source code must retain the above copyright notice, this
#    list of conditions and the following disclaimer.
# 
# 2. Redistributions in binary form must reproduce the above copyright notice,
#    this list of conditions and the following disclaimer in the documentation
#    and/or other materials provided with the distribution.
# 
# 3. Neither the name of Google Inc. nor the names of its contributors
#    may be used to endorse or promote products derived from this software without
#    specific prior written permission.
# 
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
# ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
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# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# Usage:  source install.sh
#
# This script installs all the packages required to build DeepConsensus.
#
# This script will run as-is on Ubuntu 20.04.
#
# We also assume that apt-get is already installed and available.

function note_build_stage {
  echo "========== [$(date)] Stage '${1}' starting"
}

# Update package list
################################################################################
note_build_stage "Update package list"
sudo -H apt-get -qq -y update

# Install pip
################################################################################
note_build_stage "Update pip"
sudo -H apt-get -y install python3-dev python3-pip
sudo -H apt-get -y update
python3 -m pip install --upgrade pip

# Update PATH so that newly installed pip is the one we actually use.
export PATH="$HOME/.local/bin:$PATH"
echo "$(pip --version)"

# Install python packages used by DeepConsensus.
################################################################################
python3 -m pip install --user -r requirements.txt
python3 -m pip install --user "intel-tensorflow==2.9.1"