diff --git a/mofa/simulation/lammps.py b/mofa/simulation/lammps.py index 51cd34b3..bb65fe10 100644 --- a/mofa/simulation/lammps.py +++ b/mofa/simulation/lammps.py @@ -128,6 +128,5 @@ def run_molecular_dynamics(self, mof: ase.Atoms, timesteps: int, report_frequenc if __name__ == "__main__": LMPrunner = LAMMPSRunner(lammps_command="npt_tri", lmp_sims_root_path="lmp_sims", cif_files_root_path="cif_files") test_file_index = 0 - lmp_path = LMPrunner.prep_molecular_dynamics_single(os.path.join(LMPrunner.cif_files_root_path, - LMPrunner.cif_file_names[test_file_index]), + lmp_path = LMPrunner.prep_molecular_dynamics_single(LMPrunner.cif_file_names[test_file_index], timesteps=200000, report_frequency=1000, stepsize_fs=0.5)