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I am very new to TDA in general, and giotto-tda in particular so I am very grateful for your work.
I appreciate any help you can provide.
Background
After generating the persistence diagrams, I use the fit_transform method from the PairwiseDistance class in the diagram module to compute the distance matrix (according to either "Bottleneck" or "Wasserstein" metric).
However, I get an almost symmetric matrix, like this one:
This gives me trouble, as the next step in my pipeline is visualising the diagrams using the distance matrix.
To do that, I use Muli Dimensional Scaling (MDS) (I use the MDS class in Sklear) which requires symmetric distance matrices.
Questions
By reading the docs to me is not clear, but why fit_transform does not return a symmetric matrix and it is possible ensure it does?
If it is not possible, do you have any suggestion on how I could visualise the diagrams as 2d points like I would with MDS?
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Hi Everyone 😄,
I am very new to TDA in general, and
giotto-tda
in particular so I am very grateful for your work.I appreciate any help you can provide.
Background
After generating the persistence diagrams, I use the
fit_transform
method from thePairwiseDistance
class in the diagram module to compute the distance matrix (according to either "Bottleneck" or "Wasserstein" metric).However, I get an almost symmetric matrix, like this one:
This gives me trouble, as the next step in my pipeline is visualising the diagrams using the distance matrix.
To do that, I use Muli Dimensional Scaling (MDS) (I use the
MDS
class in Sklear) which requires symmetric distance matrices.Questions
fit_transform
does not return a symmetric matrix and it is possible ensure it does?Thanks!
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