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Hi!,
In your Giotto-mapper tutorial, you used clusterer = DBSCAN(). Now, what about if i wanted to use DBSCAN with a pre-computed distance matrx. Let's say my data X contains categorical variables and I use the Gower distance to compute a pairwise distance matrix D. How do I use that in the Giotto mapper pipeline? Do I set clusterer = DBSCAN(D, metric = 'precomputed') where D is the distance matrix? Also If I choose as my filter function eccentricty, do I set filter_func = Eccentricity(D, metric = 'precomputed') where D is the distance matrix and then apply the make_mapper_pipeline? Thanks
Jon
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Hi!,
In your Giotto-mapper tutorial, you used clusterer = DBSCAN(). Now, what about if i wanted to use DBSCAN with a pre-computed distance matrx. Let's say my data X contains categorical variables and I use the Gower distance to compute a pairwise distance matrix D. How do I use that in the Giotto mapper pipeline? Do I set clusterer = DBSCAN(D, metric = 'precomputed') where D is the distance matrix? Also If I choose as my filter function eccentricty, do I set filter_func = Eccentricity(D, metric = 'precomputed') where D is the distance matrix and then apply the make_mapper_pipeline? Thanks
Jon
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