I'm trying to execute the main method from eclipse to generate fullteaching (fullteaching repo is a sibling of retorch). This is what I see:

1. Logs are not shown:

SLF4J(W): No SLF4J providers were found.
SLF4J(W): Defaulting to no-operation (NOP) logger implementation
SLF4J(W): See https://www.slf4j.org/codes.html#noProviders for further details.

2. Executing with parameters: "com.fullteaching.e2e.no_elastest.common","FullTeaching","../../retorch-st-fullteaching"
   does not find the resource file: `Exception in thread "main" java.nio.file.NoSuchFileException: retorchfiles\configurations\FullTeachingSystemResources.json

@javiertuya
I was experiencing some problems with the IDE during the past week, I've managed more or less to solve it (working with the LAPTOP and DESKTOP in parallel). Some remarks (that I don't understand):

1. FullTeaching was with the old orchestration generation tool, which is why you don't find the Resources file or the configuration file. Now, the ft_AlignOrchGeneratorVersion is fully updated and working.
2. I've created a class with a simple call to the main in the FullTeaching project, importing the snapshot orchestration using the dependency:

        <dependency>
            <groupId>io.github.giis-uniovi</groupId>
            <artifactId>retorch-orchestration</artifactId>
            <version>1.1.1-ft_migrateschedulerorchestrator-SNAPSHOT</version>
        </dependency>

The class looks like this:

package com.fullteaching.e2e.no_elastest.functional.test;

import giis.retorch.orchestration.classifier.EmptyInputException;
import giis.retorch.orchestration.generator.OrchestationGeneratorMainClass;
import giis.retorch.orchestration.orchestrator.NoFinalActivitiesException;
import giis.retorch.orchestration.scheduler.NoTGroupsInTheSchedulerException;
import giis.retorch.orchestration.scheduler.NotValidSystemException;

import java.io.IOException;
import java.net.URISyntaxException;

public class RetorchMain {
    public static void main(String[] args) throws NoFinalActivitiesException, NoTGroupsInTheSchedulerException, EmptyInputException, IOException, URISyntaxException, NotValidSystemException, ClassNotFoundException {
        String [] argum={"com.fullteaching.e2e.no_elastest.functional.test", "FullTeaching", "./"};
        OrchestationGeneratorMainClass.main(argum);

    }
}

I've also added some test cases to check that the scripts generated are correct and solved some problems with the current implementation of the execution plan generation.
If I add the path com.fullteaching.e2e.no_elastest.functional, it fails because It finds java classes without annotations, Should I change the actual implementation to allow this behavior?
If I understood well, you have the following directories:

.
├── retorch/
│   ├── annotations
│   └── orchestration/
│       └── -YourMainClass
└── retorch-st-fullteaching

And you're trying to call RETORCHOrchestrationGeneratorMain.main() from YourMainClass in orchestration folder. I am pretty sure that it's not working because is trying to find the Resources.json and retorchCI.files (as well as the docker-compose.yml) in the orchestration folder (not in retorch-st-fullteaching). I can change the orchestration generator to provide the basepath, and allow the use case that you're trying.