installbiobash

#!/bin/bash

default="/usr/local/bin"


echo "

#
            BIOBASH INSTALLATION
Bioinformatics and Systems Biology Laboratory
            Institute for Genetics
        National University of Colombia
#


"

failure=" == WARNING! Unable to install BIOBASH =="

echo  "Hit ENTER to use the default installation directory ($default) or provide a
valid installation path below:"
read -p " > " dir

if [ -z "$dir" ]; then

    installDir=$default
else
    installDir=$dir
fi

# Does it exist?
if [ -d "$installDir" ];then
    
    # Is it writable?
    if [ -w "$installDir" ];then
        
        echo "Installing to: $installDir"
        cp ./source/*bb_* $installDir
        
        #make sure permission are correctly set for all scripts
        chmod +x ${installDir}/bb_*
        echo "Installation complete. Thank you for installing BIOBASH
        
        "
    else

    
    echo $failure
    echo " "
    echo "$installDir is not writable.Please make sure you have write access."
    echo "  "

    fi

    
else
    echo $failure
    echo "  "
    echo "  The directory you just typed ($installDir) does not exist."
    echo "  Please make sure route is correct"
    echo " "
fi