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modules.json
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modules.json
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{
"name": "genomic-medicine-sweden/tomte",
"homePage": "https://github.com/genomic-medicine-sweden/tomte",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bcftools/merge": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bcftools/mpileup": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/mpileup/bcftools-mpileup.diff"
},
"bcftools/norm": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bcftools/stats": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bcftools/view": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "a1abf90966a2a4016d3c3e41e228bfcbd4811ccc",
"installed_by": ["modules"]
},
"ensemblvep/filtervep": {
"branch": "master",
"git_sha": "6e3585d9ad20b41adc7d271009f8cb5e191ecab4",
"installed_by": ["modules"]
},
"ensemblvep/vep": {
"branch": "master",
"git_sha": "6e3585d9ad20b41adc7d271009f8cb5e191ecab4",
"installed_by": ["modules"]
},
"fastp": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/asereadcounter": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/bedtointervallist": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/createsequencedictionary": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/haplotypecaller": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/splitncigarreads": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/variantfiltration": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gawk": {
"branch": "master",
"git_sha": "97321eded31a12598837a476d3615300af413bb7",
"installed_by": ["modules"]
},
"gffcompare": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"peddy": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"patch": "modules/nf-core/peddy/peddy.diff"
},
"picard/collectinsertsizemetrics": {
"branch": "master",
"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
"installed_by": ["modules"]
},
"picard/collectrnaseqmetrics": {
"branch": "master",
"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
"installed_by": ["modules"]
},
"salmon/index": {
"branch": "master",
"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
"installed_by": ["modules"]
},
"salmon/quant": {
"branch": "master",
"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
"installed_by": ["modules"],
"patch": "modules/nf-core/salmon/quant/salmon-quant.diff"
},
"samtools/faidx": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"samtools/view": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"star/align": {
"branch": "master",
"git_sha": "a5ad53288c79fa52c5ae708c317e09ec2dd149ab",
"installed_by": ["modules"]
},
"star/genomegenerate": {
"branch": "master",
"git_sha": "a5ad53288c79fa52c5ae708c317e09ec2dd149ab",
"installed_by": ["modules"]
},
"stringtie/stringtie": {
"branch": "master",
"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
"installed_by": ["modules"]
},
"tabix/bgziptabix": {
"branch": "master",
"git_sha": "f448e846bdadd80fc8be31fbbc78d9f5b5131a45",
"installed_by": ["modules"]
},
"tabix/tabix": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"ucsc/wigtobigwig": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"untar": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "3aa0aec1d52d492fe241919f0c6100ebf0074082",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "1b6b9a3338d011367137808b49b923515080e3ba",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
"installed_by": ["subworkflows"]
}
}
}
}
}
}