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Excessive tar Warnings #54

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jasonwalker80 opened this issue Apr 14, 2021 · 1 comment
Open

Excessive tar Warnings #54

jasonwalker80 opened this issue Apr 14, 2021 · 1 comment

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@jasonwalker80
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Presumably on this line:

tar -zxf ~{ref_cache}

I'm seeing thousands of warning messages like:

tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'LIBARCHIVE.creationtime'

This can be reproduced using the NA12878 CRAM in the (soon to be a PR) SingleSampleQC.json:
gs://broad-public-datasets/NA12878/NA12878.cram

The culprit is likely the ref_cache tar archive:
gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.ref_cache.tar.gz

@jasonwalker80
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@aofarrel pointed out this:
nodejs/node#22805

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