MyeloseqHDAnalysis.json

{	
    "MyeloseqHDAnalysis.Bam":"PATH",
    "MyeloseqHDAnalysis.BamIndex":"PATH",
    "MyeloseqHDAnalysis.Name":"NAME",
    "MyeloseqHDAnalysis.OutputDir":"PATH",
    "MyeloseqHDAnalysis.SubDir":"PATH",
    "MyeloseqHDAnalysis.mrn":"NAME",
    "MyeloseqHDAnalysis.all_mrn":"NAME",
    "MyeloseqHDAnalysis.accession":"NAME",
    "MyeloseqHDAnalysis.DOB":"NAME",
    "MyeloseqHDAnalysis.sex":"NAME",
    "MyeloseqHDAnalysis.exception":"NAME",
    "MyeloseqHDAnalysis.RunInfoString":"NAME",
    "MyeloseqHDAnalysis.DragenVcf":"PATH",
    "MyeloseqHDAnalysis.DragenVcfIndex":"PATH",
    "MyeloseqHDAnalysis.refFasta":"/storage1/fs1/duncavagee/Active/SEQ/Chromoseq/process/refdata/hg38/all_sequences.fa",
    "MyeloseqHDAnalysis.ReferenceDict":"/storage1/fs1/duncavagee/Active/SEQ/Chromoseq/process/refdata/hg38/all_sequences.dict",
    "MyeloseqHDAnalysis.Vepcache":"/storage1/fs1/gtac-mgi/Active/CLE/reference/VEP_cache", 
    "MyeloseqHDAnalysis.MyeloSeqHDRepo":"/storage1/fs1/duncavagee/Active/SEQ/MyeloSeqHD/process/git/cle-myeloseqhd",
    "MyeloseqHDAnalysis.VariantDB":"/storage1/fs1/gtac-mgi/Active/CLE/validation/cle_validation/CLE_variant_database/myeloseqhd/myeloseqhd_variants.sqlite",
    "MyeloseqHDAnalysis.MinReads":5,
    "MyeloseqHDAnalysis.MinVaf":0.02,
    "MyeloseqHDAnalysis.JobGroup":"/cle/wdl/haloplex",
    "MyeloseqHDAnalysis.Queue":"gtac-mgi"
}