From 0a056dd80d8f0cabae82828e9e7cd653ab23939d Mon Sep 17 00:00:00 2001
From: Ramakrishnan <saimukundbioinfo@gmail.com>
Date: Tue, 23 Mar 2021 13:49:55 -0500
Subject: [PATCH] Adding LLR and MAPQ column to variants table

---
 definitions/tools/variants_to_table.cwl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/definitions/tools/variants_to_table.cwl b/definitions/tools/variants_to_table.cwl
index 2d2694868..b3a225ee6 100644
--- a/definitions/tools/variants_to_table.cwl
+++ b/definitions/tools/variants_to_table.cwl
@@ -33,7 +33,7 @@ inputs:
         items: string
         inputBinding:
             prefix: "-F"
-      default: ['CHROM','POS','ID','REF','ALT','set']
+      default: ['CHROM','POS','ID','REF','ALT','set','LLR', 'MQ0']
       inputBinding:
         position: 3
     genotype_fields: