Review annotations to GO:0000717 nucleotide-excision repair, DNA duplex unwinding and related terms

[raymond91125]

Dear all,

The proposal has been made to obsolete BP
GO:0000717 nucleotide-excision repair, DNA duplex unwinding
GO:0044806 G-quadruplex DNA unwinding
GO:1905466 negative regulation of G-quadruplex DNA unwinding
GO:1905467 positive regulation of G-quadruplex DNA unwinding
GO:1905465 regulation of G-quadruplex DNA unwinding
GO:0036292 DNA rewinding
For they are MFs.
see geneontology/go-ontology#29153

Experimental annotations that need to be reviewed are here:
https://docs.google.com/spreadsheets/d/1erB5WI0Z8FBHCTb3oCat92fDijtsb7u7O9-RV3dPHJE/edit?gid=0#gid=0

Impacted groups:
ComplexPortal 3
UniProt 12
FlyBase 3
TAIR 1
BHF-UCL 8 -done
PomBase 4
SGD 5

** Group contacts: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Mappings that need to be reviewed: (InterPro2GO, UniProt-Keywords, UniRule)
None

Thanks.

[ValWood]

Hi @raymond91125 it seems like we need a term for "guanine quadruplex resolver helicase" (both DNA and RNA)
this particular activity seems to be a major activity of specific helicases including the ReqQ helicases (WRN,BLM ). Pif1 family, Fanconi Anemia Helicase J, DHX36 (RHAU, G4R1) A highly specialized RNA and DNA helicase with robust G4-resolving activity, Dna2, Subunits of the TFIIH transcription/repair complex, these helicases can unwind G4 structures in the context of transcription-coupled repair. and others.

This is useful functional context to retain. I can't find another specific term to replace GO:0044806 G-quadruplex DNA unwinding

[RLovering]

I agree with Val, I had deleted our GO:0044806 G-quadruplex DNA unwinding annotations although I had sometimes applied the parent term GO:0032392 DNA geometric change

[raymond91125]

Hi @raymond91125 it seems like we need a term for "guanine quadruplex resolver helicase" (both DNA and RNA) this particular activity seems to be a major activity of specific helicases including the ReqQ helicases (WRN,BLM ). Pif1 family, Fanconi Anemia Helicase J, DHX36 (RHAU, G4R1) A highly specialized RNA and DNA helicase with robust G4-resolving activity, Dna2, Subunits of the TFIIH transcription/repair complex, these helicases can unwind G4 structures in the context of transcription-coupled repair. and others.

This is useful functional context to retain. I can't find another specific term to replace GO:0044806 G-quadruplex DNA unwinding

@ValWood Would you make a new term request, please?

[tberardini]

TAIR done.

[hattrill]

FB done.

[Antonialock]

UniProt done