From e0bf34040dbe8d866784361f4f6725e735373886 Mon Sep 17 00:00:00 2001 From: Martin Cech Date: Tue, 20 Feb 2024 13:13:23 -0800 Subject: [PATCH] update iuc tools --- usegalaxy.org/annotation.yml.lock | 4 ++++ usegalaxy.org/assembly.yml.lock | 11 +++++++++++ usegalaxy.org/bbtools.yml.lock | 6 ++++++ usegalaxy.org/fastq_quality_control.yml.lock | 1 + usegalaxy.org/graph_display_data.yml.lock | 4 ++++ usegalaxy.org/mapping.yml.lock | 2 ++ usegalaxy.org/metagenomic_analysis.yml.lock | 9 +++++++++ usegalaxy.org/ncbi_blast_.yml.lock | 1 + usegalaxy.org/rna_seq.yml.lock | 2 ++ 9 files changed, 40 insertions(+) diff --git a/usegalaxy.org/annotation.yml.lock b/usegalaxy.org/annotation.yml.lock index 3c28148b..e38c008a 100644 --- a/usegalaxy.org/annotation.yml.lock +++ b/usegalaxy.org/annotation.yml.lock @@ -75,6 +75,7 @@ tools: owner: iuc revisions: - 239ce9f24386 + - b982a9ea939c tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: fgsea @@ -374,6 +375,7 @@ tools: owner: iuc revisions: - 30f08d74024f + - 57c6718cbfcc - a7ce2601500c - b69c46064ec7 - e94187d661df @@ -386,6 +388,7 @@ tools: - 582fd74dc2a1 - 756376aeb1ae - 9feee7fc49a1 + - d0336d67702b tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: funannotate_predict @@ -420,6 +423,7 @@ tools: revisions: - 033755194fe9 - af3c1dc1d141 + - b815ec682418 - e95d52d295d7 tool_panel_section_id: annotation tool_panel_section_label: Annotation diff --git a/usegalaxy.org/assembly.yml.lock b/usegalaxy.org/assembly.yml.lock index cb8748d3..8838e1bc 100644 --- a/usegalaxy.org/assembly.yml.lock +++ b/usegalaxy.org/assembly.yml.lock @@ -102,6 +102,7 @@ tools: - 03fd468e158f - 1035adb112c0 - 1d06c8b38e77 + - 28189050e437 - 53c2bc8c2ae3 - 675ee1aa5952 - 9e58ff014088 @@ -116,11 +117,13 @@ tools: - b65a43f70b99 - d159735a6a9f - d5fb354f745d + - de1260f8a300 tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: spades_metaplasmidspades owner: iuc revisions: + - 037f9927c4ff - 4a01e0d2892c - 6b5a5842531e - b8002c3f7141 @@ -131,6 +134,7 @@ tools: owner: iuc revisions: - 34305b013402 + - 9678993ca5bd - ad8b536d1caa - d6e617c4e338 - ff41a00a6745 @@ -140,6 +144,7 @@ tools: owner: iuc revisions: - 051fd2db8a27 + - 604782a8a53a - 7490b213baa9 - 904bf932cf78 - d89ced9439f3 @@ -151,6 +156,7 @@ tools: - 1708851f8804 - 340bc17f49cf - 75405f5e2cc5 + - 7bb235ff0746 - 85fb02c43042 tool_panel_section_id: assembly tool_panel_section_label: Assembly @@ -159,6 +165,7 @@ tools: revisions: - 2a10645aeadd - 328aa71f0f3c + - 5b26685e5d3b - 9de69775f512 - e060c3987513 tool_panel_section_id: assembly @@ -249,6 +256,7 @@ tools: - 39edec572bae - 589078edd230 - 9d79beb19ac3 + - d7edbc9c3a07 - f8113c25bc6b tool_panel_section_id: assembly tool_panel_section_label: Assembly @@ -291,6 +299,7 @@ tools: - 02831bf9e95f - 2b16ba799da9 - 511e5e3cd55e + - 79b48f02db49 - 8fef980d48b5 - dfb8a4497339 tool_panel_section_id: assembly @@ -300,6 +309,7 @@ tools: revisions: - 0a10fddd97d2 - 44c66e8d21e6 + - 6c571966cfb9 - 7c9417381ad5 tool_panel_section_id: assembly tool_panel_section_label: Assembly @@ -341,6 +351,7 @@ tools: owner: iuc revisions: - 1b52f0c8ad7f + - d6c074a93c51 tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: mitohifi diff --git a/usegalaxy.org/bbtools.yml.lock b/usegalaxy.org/bbtools.yml.lock index e2063a11..97cda460 100644 --- a/usegalaxy.org/bbtools.yml.lock +++ b/usegalaxy.org/bbtools.yml.lock @@ -6,18 +6,21 @@ tools: - name: bbtools_bbduk owner: iuc revisions: + - 0840ba83860c - 159b04e36791 tool_panel_section_id: bbtools tool_panel_section_label: BBTools - name: bbtools_bbmap owner: iuc revisions: + - 3171f7f52576 - 517464809c33 tool_panel_section_id: bbtools tool_panel_section_label: BBTools - name: bbtools_bbmerge owner: iuc revisions: + - 6d084528a6f1 - c05232655d00 tool_panel_section_id: bbtools tool_panel_section_label: BBTools @@ -25,11 +28,13 @@ tools: owner: iuc revisions: - 1ef267476a17 + - a9329b77db78 tool_panel_section_id: bbtools tool_panel_section_label: BBTools - name: bbtools_callvariants owner: iuc revisions: + - adec76ebc868 - ee407fae3ccd tool_panel_section_id: bbtools tool_panel_section_label: BBTools @@ -37,5 +42,6 @@ tools: owner: iuc revisions: - 20aef74d20a1 + - e4fb34b79770 tool_panel_section_id: bbtools tool_panel_section_label: BBTools diff --git a/usegalaxy.org/fastq_quality_control.yml.lock b/usegalaxy.org/fastq_quality_control.yml.lock index 5c66ab45..04c08646 100644 --- a/usegalaxy.org/fastq_quality_control.yml.lock +++ b/usegalaxy.org/fastq_quality_control.yml.lock @@ -79,6 +79,7 @@ tools: - 819b8c1657d5 - 89d299153577 - a252d8415583 + - c1a33f603da2 - d77a9c2a242d - ecb38e2798cd tool_panel_section_id: fastq_quality_control diff --git a/usegalaxy.org/graph_display_data.yml.lock b/usegalaxy.org/graph_display_data.yml.lock index b41e8ba1..8b28109f 100644 --- a/usegalaxy.org/graph_display_data.yml.lock +++ b/usegalaxy.org/graph_display_data.yml.lock @@ -147,6 +147,7 @@ tools: - name: export2graphlan owner: iuc revisions: + - 635c90a27692 - b16989c1e3a7 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data @@ -216,6 +217,7 @@ tools: - name: graphlan owner: iuc revisions: + - 6e8eb0c0d91f - 8f62f666dcb6 - a490b70e46fc tool_panel_section_id: graph_display_data @@ -224,6 +226,7 @@ tools: owner: iuc revisions: - 5d6f8f0bef7c + - 97e3b735ed22 - cf1df6b2220a tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data @@ -268,6 +271,7 @@ tools: revisions: - 0a10fddd97d2 - 44c66e8d21e6 + - 6c571966cfb9 - 7c9417381ad5 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data diff --git a/usegalaxy.org/mapping.yml.lock b/usegalaxy.org/mapping.yml.lock index eee9d3bc..af7af428 100644 --- a/usegalaxy.org/mapping.yml.lock +++ b/usegalaxy.org/mapping.yml.lock @@ -106,6 +106,7 @@ tools: revisions: - 13022c3d3076 - 178bdbdb6d24 + - 42ce70172b72 - 5ef7ec16b04f - 79b885ce78d7 - a6fba3d92531 @@ -134,6 +135,7 @@ tools: - name: bbtools_bbmap owner: iuc revisions: + - 3171f7f52576 - 517464809c33 - 858a65b52cf9 - 9ed6579f52f3 diff --git a/usegalaxy.org/metagenomic_analysis.yml.lock b/usegalaxy.org/metagenomic_analysis.yml.lock index 41224881..7b8cd732 100644 --- a/usegalaxy.org/metagenomic_analysis.yml.lock +++ b/usegalaxy.org/metagenomic_analysis.yml.lock @@ -6,6 +6,7 @@ tools: - name: kraken2 owner: iuc revisions: + - 20e2f64aa1fe - 328c607150ff - 4a9da2b6c2e3 - e674066930b2 @@ -90,6 +91,7 @@ tools: revisions: - 0b3c3ad92827 - 28ad7ac9c193 + - 3b6f97e7094c - 4a6ee918c13a - 6ef0b5664c69 - a3b86937ead6 @@ -100,6 +102,7 @@ tools: - name: biom_convert owner: iuc revisions: + - 091bb5922a82 - 0de92f0b96ef - 1b5fc03380d4 - 54ccb7e1f49a @@ -141,6 +144,7 @@ tools: - name: cat_add_names owner: iuc revisions: + - 21bf2f07f3f3 - 8dfc90f35aba - acd9fe45eb81 tool_panel_section_id: metagenomic_analysis @@ -148,6 +152,7 @@ tools: - name: cat_prepare owner: iuc revisions: + - 51906c8c692a - 8315b5cebb82 - a40bbd70b8b1 tool_panel_section_id: metagenomic_analysis @@ -157,6 +162,7 @@ tools: revisions: - 7aebc0137f20 - c6c77d840993 + - f41dbb0b9ff8 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: cat_summarise @@ -164,11 +170,13 @@ tools: revisions: - 388e6678fa98 - 7f1aaa1932d8 + - a8216def322b tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: cat_bins owner: iuc revisions: + - 0e63d03c8790 - 18676df0cb3a - 31853794ace2 tool_panel_section_id: metagenomic_analysis @@ -434,6 +442,7 @@ tools: revisions: - 1a6cdf55390f - ec368db926f4 + - fd69c607b43f tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: humann_unpack_pathways diff --git a/usegalaxy.org/ncbi_blast_.yml.lock b/usegalaxy.org/ncbi_blast_.yml.lock index 8222b9a2..0158b99e 100644 --- a/usegalaxy.org/ncbi_blast_.yml.lock +++ b/usegalaxy.org/ncbi_blast_.yml.lock @@ -17,6 +17,7 @@ tools: - name: kraken2 owner: iuc revisions: + - 20e2f64aa1fe - 328c607150ff - 4a9da2b6c2e3 - e674066930b2 diff --git a/usegalaxy.org/rna_seq.yml.lock b/usegalaxy.org/rna_seq.yml.lock index 6fb3d2bb..eaca936e 100644 --- a/usegalaxy.org/rna_seq.yml.lock +++ b/usegalaxy.org/rna_seq.yml.lock @@ -7,6 +7,7 @@ tools: owner: iuc revisions: - 0921444c832d + - 119b069fc845 - 58c35179ebf0 - 708348a17fa1 - d6f5fa4ee473 @@ -148,6 +149,7 @@ tools: - 7ed2edc1337f - 850f3679b9b4 - 980d2a2e1180 + - b0f2be869d6d - b9e04854e2bb - c772497b2c32 - d5659efd66aa