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Node failure job with no return_code file still marked as successful in Galaxy #358

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natefoo opened this issue Apr 12, 2024 · 0 comments

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@natefoo
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natefoo commented Apr 12, 2024

Running hifiasm on the VGP instance and the node it executed on appears to have failed and the job was terminated prematurely. As a result, nothing past a certain point in the job script was executed, including capturing/writing the tool return code to return_code. Despite this, none of the postprocessing failures were fatal (due to being work_dir outputs) and for some reason, Galaxy still treated this job as successful.

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