0.75.3

What's Changed

• Add creator dockstore by @lldelisle in #1314
• Type annotation for input staging-related code by @nsoranzo in #1320
• Fix "glone" typo in error message by @bernt-matthias in #1325
• Update GitHub action versions by @nsoranzo in #1322
• Add h5py dependency, required for comparing h5 files by @mvdbeek in #1326
• Fix planemo shed_test by @mvdbeek in #1329
• Add indent and sort_keys to tool_test_json by @simonbray in #1330
• Add traceback to report template by @bernt-matthias in #1332
• Mount test data dir read-only in docker by @mvdbeek in #1327

Full Changelog: 0.75.2...0.75.3

0.75.2

What's Changed

• Drop copy_tree workaround for tool sources by @mvdbeek in #1308
• Fix workflow_lint with list + check elements in collection by @lldelisle in #1310
• Fix for_paths when path is directory of tools by @mvdbeek in #1312
• Compare versions, not tool ids to find latest tool ids by @mvdbeek in #1313

Full Changelog: 0.75.1...0.75.2

0.75.1

What's Changed

• Restore running tool tests against directory by @mvdbeek in #1303
• Don't fail planemo autoupdate if tool version not found in tool shed by @lldelisle in #1305
• workflow_lint: ensure that tool shed tool ids are valid by @lldelisle in #1306
• Add planemo_ci_setup command by @mvdbeek in #1304
• Fix recording of virtual_env_dir by @mvdbeek in #1307

New Contributors

• @lldelisle made their first contribution in #1305

Full Changelog: 0.75.0...0.75.1

0.75.0

What's Changed

• Update outdated cuffmerge url by @martenson in #1247
• Set upstream branch when pushing workflows to GitHub by @simonbray in #1249
• restore --no_cleanup to set cleanup_job to never by @bernt-matthias in #1255
• Drop support for Python 3.6 by @simonbray in #1257
• Replace CoC with link to GalaxyProject's one by @nsoranzo in #1259
• Mains resource selector must be skipped by @hexylena in #1260
• Ignore cloudflare 503 status when checking links by @bernt-matthias in #1262
• Document the use of mandatory macro parameters and add named macro tokens by @bernt-matthias in #1212
• Bump galaxy package requirements to 22.01 by @bernt-matthias in #1264
• Run local galaxy via gravity by @mvdbeek in #1232
• Lint randomlines.xml file by @simonbray in #1270
• Check if main requirement is None by @bernt-matthias in #1274
• Planemo type annotation: module planemo.commands.cmd_autoupdate by @gallardoalba in #1278
• Planemo type annotation: module planemo.cli by @gallardoalba in #1277
• Planemo type annotation: module cmd_clone by @gallardoalba in #1279
• Planemo type annotation: module cmd_tool_init by @gallardoalba in #1281
• Add type annotations to planemo.autoupdate module by @nsoranzo in #1283
• Planemo type annotation: module cmd_normalize by @gallardoalba in #1280
• Planemo type annotation: module planemo.conda by @gallardoalba in #1284
• Add type annotations to planemo.glob and planemo.virtualenv by @nsoranzo in #1287
• Drop conda_lint command by @nsoranzo in #1288
• Type annotations for planemo.bioblend, planemo.git, and planemo.cwl.run by @adRn-s in #1285
• Add FAQ page to docs by @simonbray in #1271
• Add type annotations to planemo.runnable and planemo.workflow_lint by @nsoranzo in #1291
• Make --channels also affect mulled channels and update/extend howto use bioconda artifacts by @bernt-matthias in #1227
• Planemo type annotation: config, context and factory by @gallardoalba in #1292
• [Training] update templates to use new, more accessible box style by @shiltemann in #1293
• Pre-create expected output file on disk by @mvdbeek in #1276
• Control publish setting in .dockstore.yml, fix first release not appearing on dockstore by @mvdbeek in #1295
• Fix disclosure css for summary elements by @mvdbeek in #1294
• Enable providing multiple --tool_data_table options by @mvdbeek in #1296
• Make startup timeout configurable by @mvdbeek in #1298
• Fix printing planemo test logs by @mvdbeek in #1299
• Fix workflow test when input is optional but also workflow output by @mvdbeek in #1297
• Use pytest.raises() instead of ad-hoc assert_raises_regexp() context manager by @nsoranzo in #1302
• Prepare 0.75.0 by @mvdbeek in #1301

New Contributors

• @adRn-s made their first contribution in #1285

Full Changelog: 0.74.11...0.75.0

0.74.10

What's Changed

• Add rerun subcommand for rerunning jobs by @simonbray in #1140
• Allways use random id_secret for testing by @bernt-matthias in #1198
• Use WorkflowId rather than StoredWorkflowId when autoupdating subworkflows by @simonbray in #1205
• Add missing ToolShed categories by @nsoranzo in #1207
• Fixed minor typo in documentation by @stain in #1206
• Generate workflow test from invocation id by @simonbray in #1209
• Add test and fix for failing docker_galaxy engine by @simonbray in #1215
• Updates to workflow autoupdate required for IWC bot by @simonbray in #1214
• Adding best practices and assertion checks to workflow_lint by @simonbray in #1213
• training-init: add the FAQ index page to tutorial folder by @shiltemann in #1217
• Tool builder: add profile and suffix version by @gallardoalba in #1222
• Make galaxy config cleanup_job depend on --no_cleanup by @bernt-matthias in #1226
• Update best_practice_search() for changes in galaxy-tool-util by @nsoranzo in #1224
• Drop unused Python dependencies and upgrade syntax to Python 3.6 by @nsoranzo in #1228
• Format code with black and isort by @nsoranzo in #1231
• Pin planemo to last known working major galaxy version by @mvdbeek in #1230
• Enable Galaxy outputs_to_working_directory by default by @bernt-matthias in #1199
• Allow specifying URL and API key with workflow autoupdate and docs improvements by @simonbray in #1237
• docs: Make 'seqtk seq -A' invocation consistent by @marupanda in #1238
• add option to limit test run time time by @bernt-matthias in #1236

New Contributors

• @stain made their first contribution in #1206
• @gallardoalba made their first contribution in #1222
• @marupanda made their first contribution in #1238

Full Changelog: 0.74.9...0.74.10

0.74.7

Release version 0.74.7

0.74.3

Release version 0.74.3

0.74.1

• Fix ci_find_tools and ci_find_repos commands. Pull Request #1127

0.62.1

• Init & update submodules when installing and creating packages. Stop distributing eggs (thanks to @nsoranzo). Commit 1ab8530

0.62.0

• Use unicodify() on exceptions and subprocess outputs (thanks to @nsoranzo). Pull Request #944
• Do not override None with empty string (thanks to @ic4f). Pull Request #950
• Update Docker template for training material generation (thanks to @bedroesb). Pull Request #958
• Add support for suite of repos with different owners (thanks to @nsoranzo). Pull Request #959
• Link for collection details updated in the docs (thanks to @martin-raden). Pull Request #963
• Move most tests to Python 3.7, drop Python 3.4 (thanks to @nsoranzo). Pull Request #964
• Remove confusing warning. Pull Request #966