From df31c001c5a3825197b0cbfd4f2fe0bd92bde64c Mon Sep 17 00:00:00 2001
From: M Bernt <m.bernt@ufz.de>
Date: Mon, 25 Nov 2024 11:33:18 +0100
Subject: [PATCH] Fix workflow (#61)

* fix workflow

* fix planemo option
---
 .github/workflows/tools.yaml | 3 ++-
 planemo_ci_actions.sh        | 2 +-
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/tools.yaml b/.github/workflows/tools.yaml
index 94f61b1..c4c17b9 100644
--- a/.github/workflows/tools.yaml
+++ b/.github/workflows/tools.yaml
@@ -184,11 +184,12 @@ jobs:
       run: |
         set -x
         # check if the ToolIDValid linter is called (no of tools - 1 ) times, i.e. is skipped once
-        if [ "$(grep -c ToolIDValid lint_report.txt)" != "2" ]; then
+        if [ "$(grep -c ToolIDValid lint_report.txt)" != "3" ]; then
           echo "expecting exactly 2 tests for ToolIDValid"; exit 1; 
         fi
         grep tool1 lint_report.txt
         grep tool2 lint_report.txt
+        grep fail lint_report.txt
         grep "ERROR: Error 'HTTPConnectionPool" lint_report.txt
         grep "TestsNoValid" lint_report.txt
   test-tools:
diff --git a/planemo_ci_actions.sh b/planemo_ci_actions.sh
index 28c5b34..eeeec59 100755
--- a/planemo_ci_actions.sh
+++ b/planemo_ci_actions.sh
@@ -200,7 +200,7 @@ if [ "$MODE" == "combine" ]; then
   [ "$PLANEMO_MD_REPORT" == "true" ] && (
     planemo test_reports upload/tool_test_output.json --test_output_markdown upload/tool_test_output.md
     if [ "$(stat -c %s upload/tool_test_output.md)" -gt 1048576 ]; then
-      planemo test_reports upload/tool_test_output.json --test_output_minimal_markdown upload/tool_test_output.md
+      planemo test_reports upload/tool_test_output.json --test_output_markdown_minimal upload/tool_test_output.md
     fi
   )
   # get statistics