From 82aa552d575f85fe7c2f77fecc630e0da31ae7de Mon Sep 17 00:00:00 2001 From: Matthias Bernt Date: Sun, 29 Jan 2023 12:14:47 +0100 Subject: [PATCH] mount tool repo root read only for containerized tests xref https://github.com/galaxyproject/planemo/pull/1327 --- planemo_ci_actions.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/planemo_ci_actions.sh b/planemo_ci_actions.sh index f585864..d7bd1f5 100755 --- a/planemo_ci_actions.sh +++ b/planemo_ci_actions.sh @@ -2,7 +2,7 @@ set -exo pipefail PLANEMO_TEST_OPTIONS=("--database_connection" "$DATABASE_CONNECTION" "--galaxy_source" "https://github.com/$GALAXY_FORK/galaxy" "--galaxy_branch" "$GALAXY_BRANCH" "--galaxy_python_version" "$PYTHON_VERSION" --test_timeout "$TEST_TIMEOUT") -PLANEMO_CONTAINER_DEPENDENCIES=("--biocontainers" "--no_dependency_resolution" "--no_conda_auto_init") +PLANEMO_CONTAINER_DEPENDENCIES=("--biocontainers" "--no_dependency_resolution" "--no_conda_auto_init" "--docker_extra_volume" "./") PLANEMO_WORKFLOW_OPTIONS=("--shed_tool_conf" "/cvmfs/main.galaxyproject.org/config/shed_tool_conf.xml" "--no_shed_install" "--tool_data_table" "/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml" "--tool_data_table" "/cvmfs/data.galaxyproject.org/byhand/location/tool_data_table_conf.xml" "--tool_data_path" "/cvmfs/data.galaxyproject.org/" "--docker_extra_volume" "/cvmfs") read -ra ADDITIONAL_PLANEMO_OPTIONS <<< "$ADDITIONAL_PLANEMO_OPTIONS"