diff --git a/gxformat2/schema/v19_09.py b/gxformat2/schema/v19_09.py index 5d6778e..5268193 100644 --- a/gxformat2/schema/v19_09.py +++ b/gxformat2/schema/v19_09.py @@ -6613,7 +6613,10 @@ def save( booltype, ) ) -uri_strtype_False_True_None_None = _URILoader(strtype, False, True, None, None) +GalaxyWorkflow_classLoader = _EnumLoader(("GalaxyWorkflow",), "GalaxyWorkflow_class") +uri_GalaxyWorkflow_classLoader_False_True_None_None = _URILoader( + GalaxyWorkflow_classLoader, False, True, None, None +) array_of_WorkflowInputParameterLoader = _ArrayLoader(WorkflowInputParameterLoader) idmap_inputs_array_of_WorkflowInputParameterLoader = _IdMapLoader( array_of_WorkflowInputParameterLoader, "id", "type" diff --git a/java/src/main/java/org/galaxyproject/gxformat2/v19_09/GalaxyWorkflow.java b/java/src/main/java/org/galaxyproject/gxformat2/v19_09/GalaxyWorkflow.java index a994b9c..726639d 100644 --- a/java/src/main/java/org/galaxyproject/gxformat2/v19_09/GalaxyWorkflow.java +++ b/java/src/main/java/org/galaxyproject/gxformat2/v19_09/GalaxyWorkflow.java @@ -52,7 +52,7 @@ public interface GalaxyWorkflow extends Process, HasUUID, Saveable { /** * Getter for property https://galaxyproject.org/gxformat2/v19_09#GalaxyWorkflow/class
*/ - String getClass_(); + GalaxyWorkflow_class getClass_(); /** * Getter for property https://w3id.org/cwl/cwl#Labeled/label
* diff --git a/java/src/main/java/org/galaxyproject/gxformat2/v19_09/GalaxyWorkflowImpl.java b/java/src/main/java/org/galaxyproject/gxformat2/v19_09/GalaxyWorkflowImpl.java index 204d95a..57753ff 100644 --- a/java/src/main/java/org/galaxyproject/gxformat2/v19_09/GalaxyWorkflowImpl.java +++ b/java/src/main/java/org/galaxyproject/gxformat2/v19_09/GalaxyWorkflowImpl.java @@ -61,12 +61,12 @@ public java.util.Optional getId() { return this.id; } - private String class_; + private GalaxyWorkflow_class class_; /** * Getter for property https://galaxyproject.org/gxformat2/v19_09#GalaxyWorkflow/class
*/ - public String getClass_() { + public GalaxyWorkflow_class getClass_() { return this.class_; } @@ -310,10 +310,10 @@ public GalaxyWorkflowImpl( } else { __baseUri = (String) id.orElse(null); } - String class_; + GalaxyWorkflow_class class_; try { class_ = - LoaderInstances.uri_StringInstance_False_True_None_None.loadField( + LoaderInstances.uri_GalaxyWorkflow_class_False_True_None_None.loadField( __doc.get("class"), __baseUri, __loadingOptions); } catch (ValidationException e) { class_ = null; // won't be used but prevents compiler from complaining. @@ -487,7 +487,7 @@ public GalaxyWorkflowImpl( this.inputs = (java.util.List) inputs; this.outputs = (java.util.List) outputs; this.uuid = (java.util.Optional) uuid; - this.class_ = (String) class_; + this.class_ = (GalaxyWorkflow_class) class_; this.steps = (java.util.List) steps; this.report = (java.util.Optional) report; this.tags = (java.util.Optional>) tags; diff --git a/java/src/main/java/org/galaxyproject/gxformat2/v19_09/GalaxyWorkflow_class.java b/java/src/main/java/org/galaxyproject/gxformat2/v19_09/GalaxyWorkflow_class.java new file mode 100644 index 0000000..616bfc1 --- /dev/null +++ b/java/src/main/java/org/galaxyproject/gxformat2/v19_09/GalaxyWorkflow_class.java @@ -0,0 +1,38 @@ +// Copyright Common Workflow Language project contributors +// +// Licensed under the Apache License, Version 2.0 (the "License"); +// you may not use this file except in compliance with the License. +// You may obtain a copy of the License at +// +// http://www.apache.org/licenses/LICENSE-2.0 +// +// Unless required by applicable law or agreed to in writing, software +// distributed under the License is distributed on an "AS IS" BASIS, +// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +// See the License for the specific language governing permissions and +// limitations under the License. + +package org.galaxyproject.gxformat2.v19_09; + +import org.galaxyproject.gxformat2.v19_09.utils.ValidationException; + +public enum GalaxyWorkflow_class { + GALAXYWORKFLOW("GalaxyWorkflow"); + + private static String[] symbols = new String[] {"GalaxyWorkflow"}; + private String docVal; + + private GalaxyWorkflow_class(final String docVal) { + this.docVal = docVal; + } + + public static GalaxyWorkflow_class fromDocumentVal(final String docVal) { + for (final GalaxyWorkflow_class val : GalaxyWorkflow_class.values()) { + if (val.docVal.equals(docVal)) { + return val; + } + } + throw new ValidationException( + String.format("Expected one of %s", GalaxyWorkflow_class.symbols, docVal)); + } +} diff --git a/java/src/main/java/org/galaxyproject/gxformat2/v19_09/utils/ConstantMaps.java b/java/src/main/java/org/galaxyproject/gxformat2/v19_09/utils/ConstantMaps.java index 9e60c96..f88ca00 100644 --- a/java/src/main/java/org/galaxyproject/gxformat2/v19_09/utils/ConstantMaps.java +++ b/java/src/main/java/org/galaxyproject/gxformat2/v19_09/utils/ConstantMaps.java @@ -14,7 +14,7 @@ public class ConstantMaps { vocab.put("EnumSchema", "https://w3id.org/cwl/salad#EnumSchema"); vocab.put("File", "https://galaxyproject.org/gxformat2/v19_09#GalaxyType/File"); vocab.put("GalaxyType", "https://galaxyproject.org/gxformat2/v19_09#GalaxyType"); - vocab.put("GalaxyWorkflow", "https://galaxyproject.org/gxformat2/v19_09#GalaxyWorkflow"); + vocab.put("GalaxyWorkflow", "GalaxyWorkflow"); vocab.put("HasStepErrors", "https://galaxyproject.org/gxformat2/gxformat2common#HasStepErrors"); vocab.put( "HasStepPosition", "https://galaxyproject.org/gxformat2/gxformat2common#HasStepPosition"); @@ -72,7 +72,7 @@ public class ConstantMaps { rvocab.put("https://w3id.org/cwl/salad#EnumSchema", "EnumSchema"); rvocab.put("https://galaxyproject.org/gxformat2/v19_09#GalaxyType/File", "File"); rvocab.put("https://galaxyproject.org/gxformat2/v19_09#GalaxyType", "GalaxyType"); - rvocab.put("https://galaxyproject.org/gxformat2/v19_09#GalaxyWorkflow", "GalaxyWorkflow"); + rvocab.put("GalaxyWorkflow", "GalaxyWorkflow"); rvocab.put( "https://galaxyproject.org/gxformat2/gxformat2common#HasStepErrors", "HasStepErrors"); rvocab.put( diff --git a/java/src/main/java/org/galaxyproject/gxformat2/v19_09/utils/LoaderInstances.java b/java/src/main/java/org/galaxyproject/gxformat2/v19_09/utils/LoaderInstances.java index f11bd0d..00452eb 100644 --- a/java/src/main/java/org/galaxyproject/gxformat2/v19_09/utils/LoaderInstances.java +++ b/java/src/main/java/org/galaxyproject/gxformat2/v19_09/utils/LoaderInstances.java @@ -228,8 +228,10 @@ public class LoaderInstances { false, 2, null); - public static Loader uri_StringInstance_False_True_None_None = - new UriLoader(StringInstance, false, true, null, null); + public static Loader GalaxyWorkflow_class = + new EnumLoader(GalaxyWorkflow_class.class); + public static Loader uri_GalaxyWorkflow_class_False_True_None_None = + new UriLoader(GalaxyWorkflow_class, false, true, null, null); public static Loader> array_of_WorkflowStep = new ArrayLoader(WorkflowStep); public static Loader> idmap_steps_array_of_WorkflowStep = diff --git a/typescript/docs/assets/search.js b/typescript/docs/assets/search.js index 7e64786..6f718c3 100644 --- a/typescript/docs/assets/search.js +++ b/typescript/docs/assets/search.js @@ -1 +1 @@ -window.searchData = JSON.parse("{\"kinds\":{\"8\":\"Enumeration\",\"16\":\"Enumeration member\",\"64\":\"Function\",\"128\":\"Class\",\"256\":\"Interface\",\"512\":\"Constructor\",\"1024\":\"Property\",\"2048\":\"Method\",\"65536\":\"Type 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\ No newline at end of file diff --git a/typescript/docs/classes/GalaxyWorkflow.html b/typescript/docs/classes/GalaxyWorkflow.html index e8f2fbc..be1f7d6 100644 --- a/typescript/docs/classes/GalaxyWorkflow.html +++ b/typescript/docs/classes/GalaxyWorkflow.html @@ -12,7 +12,7 @@

A note about label field.

users will primarily identify the workflow using. Legacy support - this may also be called 'name' and Galaxy will consume the workflow document fine and treat this attribute correctly - however in order to validate against this workflow definition schema the attribute should be called label.

-

Hierarchy

  • Saveable
    • GalaxyWorkflow

Implements

Index

Constructors

Properties

Methods

Constructors

constructor

Properties

class_

class_: string

Optional creator

creator?: any
+

Hierarchy

  • Saveable
    • GalaxyWorkflow

Implements

Index

Constructors

Properties

Methods

Constructors

constructor

Properties

class_

class_: GALAXYWORKFLOW

Optional creator

creator?: any

Can be a schema.org Person (https://schema.org/Person) or Organization (https://schema.org/Organization) entity

Optional doc

doc?: string | string[]

A documentation string for this object, or an array of strings which should be concatenated.

diff --git a/typescript/docs/enums/GalaxyWorkflow_class.html b/typescript/docs/enums/GalaxyWorkflow_class.html new file mode 100644 index 0000000..59de327 --- /dev/null +++ b/typescript/docs/enums/GalaxyWorkflow_class.html @@ -0,0 +1 @@ +GalaxyWorkflow_class | org.galaxyproject.gxformat2.v19_09
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Enumeration GalaxyWorkflow_class

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Enumeration members

Enumeration members

GALAXYWORKFLOW

GALAXYWORKFLOW = "GalaxyWorkflow"

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\ No newline at end of file diff --git a/typescript/docs/index.html b/typescript/docs/index.html index 3165d5f..48357f9 100644 --- a/typescript/docs/index.html +++ b/typescript/docs/index.html @@ -1 +1 @@ -org.galaxyproject.gxformat2.v19_09
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org.galaxyproject.gxformat2.v19_09

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\ No newline at end of file +org.galaxyproject.gxformat2.v19_09
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org.galaxyproject.gxformat2.v19_09

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\ No newline at end of file diff --git a/typescript/docs/interfaces/GalaxyWorkflowProperties.html b/typescript/docs/interfaces/GalaxyWorkflowProperties.html index 16b622b..581977a 100644 --- a/typescript/docs/interfaces/GalaxyWorkflowProperties.html +++ b/typescript/docs/interfaces/GalaxyWorkflowProperties.html @@ -12,7 +12,7 @@

A note about label field.

users will primarily identify the workflow using. Legacy support - this may also be called 'name' and Galaxy will consume the workflow document fine and treat this attribute correctly - however in order to validate against this workflow definition schema the attribute should be called label.

-

Hierarchy

Implemented by

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Properties

Properties

Optional class_

class_?: string

Optional creator

creator?: any
+

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Implemented by

Index

Properties

Properties

Optional class_

class_?: GALAXYWORKFLOW

Optional creator

creator?: any

Can be a schema.org Person (https://schema.org/Person) or Organization (https://schema.org/Organization) entity

Optional doc

doc?: string | string[]

A documentation string for this object, or an array of strings which should be concatenated.

diff --git a/typescript/docs/modules.html b/typescript/docs/modules.html index a4401cd..d7857c9 100644 --- a/typescript/docs/modules.html +++ b/typescript/docs/modules.html @@ -1,4 +1,4 @@ -org.galaxyproject.gxformat2.v19_09
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Functions

Functions

loadDocument

  • Parameters

    • doc: any
    • Optional baseuri: string
    • Optional loadingOptions: LoadingOptions

    Returns Promise<GalaxyWorkflow | GalaxyWorkflow[]>

loadDocumentByString

  • Parameters

    • doc: string
    • uri: string
    • Optional loadingOptions: LoadingOptions

    Returns Promise<GalaxyWorkflow | GalaxyWorkflow[]>

shortname

  • shortname(inputId: string): string

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\ No newline at end of file diff --git a/typescript/src/GalaxyWorkflow.ts b/typescript/src/GalaxyWorkflow.ts index ac67084..cd1defe 100644 --- a/typescript/src/GalaxyWorkflow.ts +++ b/typescript/src/GalaxyWorkflow.ts @@ -39,7 +39,7 @@ export class GalaxyWorkflow extends Saveable implements Internal.GalaxyWorkflowP * The unique identifier for this object. */ id?: undefined | string - class_: string + class_: Internal.GalaxyWorkflow_class /** * A short, human-readable label of this object. @@ -114,7 +114,7 @@ export class GalaxyWorkflow extends Saveable implements Internal.GalaxyWorkflowP release?: undefined | string - constructor ({loadingOptions, extensionFields, id, class_ = 'GalaxyWorkflow', label, doc, inputs, outputs, uuid, steps, report, tags, creator, license, release} : {loadingOptions?: LoadingOptions} & Internal.GalaxyWorkflowProperties) { + constructor ({loadingOptions, extensionFields, id, class_ = Internal.GalaxyWorkflow_class.GALAXYWORKFLOW, label, doc, inputs, outputs, uuid, steps, report, tags, creator, license, release} : {loadingOptions?: LoadingOptions} & Internal.GalaxyWorkflowProperties) { super(loadingOptions) this.extensionFields = extensionFields ?? {} this.id = id @@ -177,7 +177,7 @@ export class GalaxyWorkflow extends Saveable implements Internal.GalaxyWorkflowP let class_ try { - class_ = await loadField(_doc.class, LoaderInstances.uristrtypeFalseTrueNoneNone, + class_ = await loadField(_doc.class, LoaderInstances.uriGalaxyWorkflow_classLoaderFalseTrueNoneNone, baseuri, loadingOptions) } catch (e) { if (e instanceof ValidationException) { diff --git a/typescript/src/GalaxyWorkflowProperties.ts b/typescript/src/GalaxyWorkflowProperties.ts index 75b4796..18ddc1a 100644 --- a/typescript/src/GalaxyWorkflowProperties.ts +++ b/typescript/src/GalaxyWorkflowProperties.ts @@ -27,7 +27,7 @@ export interface GalaxyWorkflowProperties extends Internal.ProcessProperties, In * The unique identifier for this object. */ id?: undefined | string - class_?: string + class_?: Internal.GalaxyWorkflow_class /** * A short, human-readable label of this object. diff --git a/typescript/src/GalaxyWorkflow_class.ts b/typescript/src/GalaxyWorkflow_class.ts new file mode 100644 index 0000000..c79c5e6 --- /dev/null +++ b/typescript/src/GalaxyWorkflow_class.ts @@ -0,0 +1,4 @@ + +export enum GalaxyWorkflow_class { + GALAXYWORKFLOW='GalaxyWorkflow', +} diff --git a/typescript/src/index.ts b/typescript/src/index.ts index d18be8d..ffbeed8 100644 --- a/typescript/src/index.ts +++ b/typescript/src/index.ts @@ -12,6 +12,7 @@ export { GalaxyType, GalaxyWorkflow, GalaxyWorkflowProperties, + GalaxyWorkflow_class, HasStepErrorsProperties, HasStepPositionProperties, HasUUIDProperties, diff --git a/typescript/src/util/Internal.ts b/typescript/src/util/Internal.ts index 27e966e..7d092c9 100644 --- a/typescript/src/util/Internal.ts +++ b/typescript/src/util/Internal.ts @@ -29,6 +29,7 @@ export * from '../EnumSchemaProperties' export * from '../GalaxyType' export * from '../GalaxyWorkflow' export * from '../GalaxyWorkflowProperties' +export * from '../GalaxyWorkflow_class' export * from '../HasStepErrorsProperties' export * from '../HasStepPositionProperties' export * from '../HasUUIDProperties' diff --git a/typescript/src/util/LoaderInstances.ts b/typescript/src/util/LoaderInstances.ts index 413f2b7..737e78b 100644 --- a/typescript/src/util/LoaderInstances.ts +++ b/typescript/src/util/LoaderInstances.ts @@ -21,6 +21,7 @@ import { GalaxyType, GalaxyWorkflow, GalaxyWorkflowProperties, + GalaxyWorkflow_class, HasStepErrorsProperties, HasStepPositionProperties, HasUUIDProperties, @@ -133,7 +134,8 @@ export const unionOfundefinedtypeOrGalaxyWorkflowLoader = new _UnionLoader([unde export const uriunionOfundefinedtypeOrGalaxyWorkflowLoaderFalseFalseNoneNone = new _URILoader(unionOfundefinedtypeOrGalaxyWorkflowLoader, false, false, undefined, undefined); export const uriunionOfundefinedtypeOrstrtypeOrarrayOfstrtypeFalseFalse2None = new _URILoader(unionOfundefinedtypeOrstrtypeOrarrayOfstrtype, false, false, 2, undefined); export const unionOfundefinedtypeOrbooltype = new _UnionLoader([undefinedtype, booltype]); -export const uristrtypeFalseTrueNoneNone = new _URILoader(strtype, false, true, undefined, undefined); +export const GalaxyWorkflow_classLoader = new _EnumLoader((Object.keys(GalaxyWorkflow_class) as Array).map(key => GalaxyWorkflow_class[key])); +export const uriGalaxyWorkflow_classLoaderFalseTrueNoneNone = new _URILoader(GalaxyWorkflow_classLoader, false, true, undefined, undefined); export const arrayOfWorkflowInputParameterLoader = new _ArrayLoader([WorkflowInputParameterLoader]); export const idmapinputsarrayOfWorkflowInputParameterLoader = new _IdMapLoader(arrayOfWorkflowInputParameterLoader, 'id', 'type'); export const arrayOfWorkflowOutputParameterLoader = new _ArrayLoader([WorkflowOutputParameterLoader]);