From 96fab3adc27bebde46b5ff2fb6539a36f566c5e3 Mon Sep 17 00:00:00 2001 From: Wendi Bacon <44605769+nomadscientist@users.noreply.github.com> Date: Tue, 3 Dec 2024 11:19:53 +0000 Subject: [PATCH 1/2] Update readme with Galaxy Lab documentation Also added editorial board (spent yesterday discussing similar for single-cell in GTN so seemed fitting to pull across these acknowledgements for reviewing here!) Improved vocabulary listing --- README.md | 31 +++++++++++++++++++------------ 1 file changed, 19 insertions(+), 12 deletions(-) diff --git a/README.md b/README.md index 909bfa1f..8e863040 100644 --- a/README.md +++ b/README.md @@ -1,26 +1,35 @@ Galaxy Codex ============ -Galaxy Communities Dock (Galaxy CoDex) is a catalog of resources for Galaxy communities. +Galaxy Communities Dock (Galaxy CoDex) stores resources for Galaxy communities. Currently, we have two main resources: -1. **Galaxy Community Catalog**: from tools, training & workflows -2. **Galaxy Labs**: (led by Galaxy Australia!) main and tool panel content for communities to spin up subdomain pages +1. **Galaxy Community Catalog**: from tools, training & workflows. The catalog is automatically updated every week. +2. **Galaxy Labs**: (led by Galaxy Australia!) main and tool panel content for communities to spin up UI-tested & informed subdomain pages -This repository stores the sources to build all of this content. The catalog is automatically updated every week. # Join the CoDex Any Galaxy Community can be added to this project and benefit from the dedicated resources. **Learn [how to add your community](https://training.galaxyproject.org/training-material/topics/community/faqs/codex.html)** in the dedicated GTN tutorial. -# Galaxy Community Catalog -To generate interactive tables that can be embedded into Galaxy Labs (subdomains) and websites via an iframe. +# 1. Galaxy Community Catalog +To generate interactive tables that can be embedded into subdomains and websites via an iframe. **Learn [how to generate the Galaxy Community Catalog](https://training.galaxyproject.org/training-material//topics/dev/tutorials/community-tool-table/tutorial.html)** in the dedicated GTN tutorial. -# Galaxy Lab -To generate GalaxyLab content, you can follow our documentation (to be added!). -To spin up a GalaxyLab on your server, you can follow our documentation (to be added!). +# 2. Galaxy Lab +To generate Galaxy Lab content, you can follow [our documentation](https://labs.usegalaxy.org.au/). + +# Vocabulary +**Galaxy Community**: Galaxy Community of Practice. You can see a full list of Special Interest Groups in the [SIG Directory](https://galaxyproject.org/community/sig). +**Galaxy Server**: Computational power/infrastructure that a Galaxy instance uses, such as usegalaxy.eu or usegalaxy.org + **Subdomain**: General term for Galaxy instance aimed at specific community (like microbiome or single-cell). Uses a specific Galaxy server. + **Galaxy Lab**: Specific style of UI-informed subdomain, Galaxy Australia built a new method for generating the main and tool panels, known as a Galaxy Lab. + +# Editorial Board +We thank these people for maintaining this resource and providing reviews to pull requests: +@paulzierep, @bebatut, @neoformit +Would you be willing to help with reviewing pull requests? Get in touch with any of the editorial board members! # Galaxy Community Catalog content @@ -59,6 +68,4 @@ Suite runs on main servers | Number of runs of the suite tools on all UseGalaxy Deprecated | Deprecation status after review by a domain expert To keep | Status to add to a community after review by a domain expert -# Vocabulary -**Galaxy Lab**: Formerly known as Subdomains, Galaxy Australia built a new method for generating the main and tool panels for a Galaxy subdomain, known as a Galaxy Lab. -**Galaxy Community**: Galaxy Community of Practice. You can see a full list of Special Interest Groups in the [SIG Directory](https://galaxyproject.org/community/sig). + From c653f836b2bc486f498c2784808b295dbef304d3 Mon Sep 17 00:00:00 2001 From: Wendi Bacon <44605769+nomadscientist@users.noreply.github.com> Date: Tue, 3 Dec 2024 12:40:20 +0000 Subject: [PATCH 2/2] Update README.md --- README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 8e863040..0eebbde4 100644 --- a/README.md +++ b/README.md @@ -21,10 +21,10 @@ To generate interactive tables that can be embedded into subdomains and websites To generate Galaxy Lab content, you can follow [our documentation](https://labs.usegalaxy.org.au/). # Vocabulary -**Galaxy Community**: Galaxy Community of Practice. You can see a full list of Special Interest Groups in the [SIG Directory](https://galaxyproject.org/community/sig). -**Galaxy Server**: Computational power/infrastructure that a Galaxy instance uses, such as usegalaxy.eu or usegalaxy.org - **Subdomain**: General term for Galaxy instance aimed at specific community (like microbiome or single-cell). Uses a specific Galaxy server. - **Galaxy Lab**: Specific style of UI-informed subdomain, Galaxy Australia built a new method for generating the main and tool panels, known as a Galaxy Lab. +- **Galaxy Community**: Galaxy Community of Practice. You can see a full list of Special Interest Groups in the [SIG Directory](https://galaxyproject.org/community/sig). +- **Galaxy Server**: Computational power/infrastructure that a Galaxy instance uses, such as usegalaxy.eu or usegalaxy.org +- **Subdomain**: General term for Galaxy instance aimed at specific community (like microbiome or single-cell). Uses a specific Galaxy server. +- **Galaxy Lab**: Specific style of UI-informed subdomain, Galaxy Australia built a new method for generating the main and tool panels, known as a Galaxy Lab. # Editorial Board We thank these people for maintaining this resource and providing reviews to pull requests: