From 3e5d0d2ebf358e443653f64d57a4baf487516fe1 Mon Sep 17 00:00:00 2001
From: Cameron Hyde <chyde@neoformit.com>
Date: Wed, 30 Oct 2024 06:02:49 +1000
Subject: [PATCH 1/6] Workflow to link to rendered lab webpages

---
 .github/workflows/link_labs.yml | 54 +++++++++++++++++++++++++++++++++
 1 file changed, 54 insertions(+)
 create mode 100644 .github/workflows/link_labs.yml

diff --git a/.github/workflows/link_labs.yml b/.github/workflows/link_labs.yml
new file mode 100644
index 00000000..081b7205
--- /dev/null
+++ b/.github/workflows/link_labs.yml
@@ -0,0 +1,54 @@
+name: Post link to lab
+
+on:
+  pull_request:
+    types: [opened, synchronize]
+
+jobs:
+  post-comment:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v3
+
+      - name: Set up Git
+        run: git fetch origin main
+
+      - name: Get list of changed files
+        id: changed-files
+        run: |
+          git diff --name-only origin/main...HEAD > changed_files.txt
+          cat changed_files.txt
+
+      - name: Post comment if matching changes found
+        if: contains(steps.changed-files.outputs.changes, './communities/')
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          declare -A directories
+          FILES=$(cat changed_files.txt)
+          PR_NUMBER="${{ github.event.number }}"
+          USERNAME="${{ github.actor }}"
+          BRANCH_NAME="${{ github.head_ref }}"
+
+          for FILE in $FILES; do
+            if [[ "$FILE" == ./my/repo/path/*/lab/* ]]; then
+              NAME=$(echo "$FILE" | cut -d'/' -f5)
+              # Check if this directory has already been processed
+              if [[ -z "${directories[$NAME]}" ]]; then
+                directories[$NAME]=1
+                COMMENT=$(cat <<EOF
+### Preview changes to ${NAME} Lab
+
+https://labs.usegalaxy.org.au/?content_root=https://github.com/${USERNAME}/galaxy_codex/blob/${BRANCH_NAME}/communities/${NAME}/lab/base.yml
+
+- [usegalaxy.org.yml](https://labs.usegalaxy.org.au/?content_root=https://github.com/${USERNAME}/galaxy_codex/blob/${BRANCH_NAME}/communities/${NAME}/lab/usegalaxy.org.yml)
+- [usegalaxy.eu.yml](https://labs.usegalaxy.org.au/?content_root=https://github.com/${USERNAME}/galaxy_codex/blob/${BRANCH_NAME}/communities/${NAME}/lab/usegalaxy.eu.yml)
+- [usegalaxy.org.au.yml](https://labs.usegalaxy.org.au/?content_root=https://github.com/${USERNAME}/galaxy_codex/blob/${BRANCH_NAME}/communities/${NAME}/lab/usegalaxy.org.au.yml)
+
+EOF
+)
+                gh pr comment "$PR_NUMBER" --body "$COMMENT"
+              fi
+            fi
+          done

From 791c74c006992e3444609f1b58ca67693a773b61 Mon Sep 17 00:00:00 2001
From: Cameron Hyde <chyde@neoformit.com>
Date: Wed, 30 Oct 2024 07:33:59 +1000
Subject: [PATCH 2/6] Fix yaml syntax error

---
 .github/workflows/link_labs.yml | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/link_labs.yml b/.github/workflows/link_labs.yml
index 081b7205..6c00be51 100644
--- a/.github/workflows/link_labs.yml
+++ b/.github/workflows/link_labs.yml
@@ -38,16 +38,16 @@ jobs:
               if [[ -z "${directories[$NAME]}" ]]; then
                 directories[$NAME]=1
                 COMMENT=$(cat <<EOF
-### Preview changes to ${NAME} Lab
+                ### Preview changes to ${NAME} Lab
 
-https://labs.usegalaxy.org.au/?content_root=https://github.com/${USERNAME}/galaxy_codex/blob/${BRANCH_NAME}/communities/${NAME}/lab/base.yml
+                https://labs.usegalaxy.org.au/?content_root=https://github.com/${USERNAME}/galaxy_codex/blob/${BRANCH_NAME}/communities/${NAME}/lab/base.yml
 
-- [usegalaxy.org.yml](https://labs.usegalaxy.org.au/?content_root=https://github.com/${USERNAME}/galaxy_codex/blob/${BRANCH_NAME}/communities/${NAME}/lab/usegalaxy.org.yml)
-- [usegalaxy.eu.yml](https://labs.usegalaxy.org.au/?content_root=https://github.com/${USERNAME}/galaxy_codex/blob/${BRANCH_NAME}/communities/${NAME}/lab/usegalaxy.eu.yml)
-- [usegalaxy.org.au.yml](https://labs.usegalaxy.org.au/?content_root=https://github.com/${USERNAME}/galaxy_codex/blob/${BRANCH_NAME}/communities/${NAME}/lab/usegalaxy.org.au.yml)
+                - [usegalaxy.org.yml](https://labs.usegalaxy.org.au/?content_root=https://github.com/${USERNAME}/galaxy_codex/blob/${BRANCH_NAME}/communities/${NAME}/lab/usegalaxy.org.yml)
+                - [usegalaxy.eu.yml](https://labs.usegalaxy.org.au/?content_root=https://github.com/${USERNAME}/galaxy_codex/blob/${BRANCH_NAME}/communities/${NAME}/lab/usegalaxy.eu.yml)
+                - [usegalaxy.org.au.yml](https://labs.usegalaxy.org.au/?content_root=https://github.com/${USERNAME}/galaxy_codex/blob/${BRANCH_NAME}/communities/${NAME}/lab/usegalaxy.org.au.yml)
 
-EOF
-)
+                EOF
+                )
                 gh pr comment "$PR_NUMBER" --body "$COMMENT"
               fi
             fi

From 8ddc27d3f156ac8150cd669a47e126266260fd85 Mon Sep 17 00:00:00 2001
From: Cameron Hyde <chyde@neoformit.com>
Date: Wed, 30 Oct 2024 07:37:59 +1000
Subject: [PATCH 3/6] Bump

---
 communities/spoc/lab/base.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/communities/spoc/lab/base.yml b/communities/spoc/lab/base.yml
index 8fd77d1b..20f2cac0 100644
--- a/communities/spoc/lab/base.yml
+++ b/communities/spoc/lab/base.yml
@@ -66,3 +66,5 @@ sections:
   - sections/4_community.yml
 
 # -----------------------------------------------------------------------------
+
+# Test comment

From 77de7dd8c075c6d648007fa115e7fe7665754cfa Mon Sep 17 00:00:00 2001
From: Cameron Hyde <chyde@neoformit.com>
Date: Wed, 30 Oct 2024 07:43:31 +1000
Subject: [PATCH 4/6] WIP fix workflow git fetch

---
 .github/workflows/link_labs.yml | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/.github/workflows/link_labs.yml b/.github/workflows/link_labs.yml
index 6c00be51..99741c17 100644
--- a/.github/workflows/link_labs.yml
+++ b/.github/workflows/link_labs.yml
@@ -11,12 +11,10 @@ jobs:
       - name: Checkout code
         uses: actions/checkout@v3
 
-      - name: Set up Git
-        run: git fetch origin main
-
       - name: Get list of changed files
         id: changed-files
         run: |
+          git fetch --all
           git diff --name-only origin/main...HEAD > changed_files.txt
           cat changed_files.txt
 

From 63c62aadaaf4776f0f6fcdf147df10d17e9b42d0 Mon Sep 17 00:00:00 2001
From: Cameron Hyde <chyde@neoformit.com>
Date: Wed, 30 Oct 2024 07:43:54 +1000
Subject: [PATCH 5/6] Bump

---
 communities/spoc/lab/base.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/communities/spoc/lab/base.yml b/communities/spoc/lab/base.yml
index 20f2cac0..f8576e47 100644
--- a/communities/spoc/lab/base.yml
+++ b/communities/spoc/lab/base.yml
@@ -67,4 +67,4 @@ sections:
 
 # -----------------------------------------------------------------------------
 
-# Test comment
+# Test comment .

From a7f8b470f7e717f28b8337cafd7153dedfbc31b3 Mon Sep 17 00:00:00 2001
From: Cameron Hyde <chyde@neoformit.com>
Date: Wed, 30 Oct 2024 07:49:46 +1000
Subject: [PATCH 6/6] Bump

---
 communities/spoc/lab/base.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/communities/spoc/lab/base.yml b/communities/spoc/lab/base.yml
index f8576e47..20f2cac0 100644
--- a/communities/spoc/lab/base.yml
+++ b/communities/spoc/lab/base.yml
@@ -67,4 +67,4 @@ sections:
 
 # -----------------------------------------------------------------------------
 
-# Test comment .
+# Test comment