From 62b88f1783ee2bf2b112da9497c87ca449d3578f Mon Sep 17 00:00:00 2001 From: paulzierep Date: Tue, 4 Jun 2024 11:20:49 +0200 Subject: [PATCH] Update extract_galaxy_tools.py --- bin/extract_galaxy_tools.py | 1 + 1 file changed, 1 insertion(+) diff --git a/bin/extract_galaxy_tools.py b/bin/extract_galaxy_tools.py index fbeba546..c558d6fa 100644 --- a/bin/extract_galaxy_tools.py +++ b/bin/extract_galaxy_tools.py @@ -628,6 +628,7 @@ def filter_tools( # Extract tools extractools = subparser.add_parser("extractools", help="Extract tools") extractools.add_argument("--api", "-a", required=True, help="GitHub access token") + extractools.add_argument("--all-tools-json", "-j", required=True, help="Filepath to JSON with all extracted tools") extractools.add_argument("--all-tools", "-o", required=True, help="Filepath to TSV with all extracted tools") extractools.add_argument( "--planemo-repository-list",