Collect publications / blog posts / online information of this project

[paulzierep]

We got already some content around different locations which should be summarized to keep track of all efforts, maybe in the readme ?

Hub posts:

• https://galaxyproject.org/news/2024-04-microgalaxy-hackathon/
• https://galaxyproject.org/events/gcc2024/training/tool-finding/
• https://galaxyproject.org/news/2023-11-06-biohackathon/

Biohackathon

• https://github.com/elixir-europe/biohackathon-projects-2023/tree/main/25

Projects that used the CoDex

• https://f1000research.com/posters/13-715
• https://research-software-ecosystem.github.io
• https://github.com/usegalaxy-eu/microgalaxy_technical_paper_2024

GTN

• https://training.galaxyproject.org/training-material//topics/dev/tutorials/community-tool-table/tutorial.html
• https://training.galaxyproject.org/training-material//topics/dev/tutorials/tool-annotation/tutorial.html

[paulzierep]

Since the new workflow logic pushes results to the dedicated results branch, we also need to update all depending paths for the results.

[supernord]

@paulzierep / @bebatut - should we add this information to a dedicated page on the website for the CoDex? I can do this as part of the BioHackathon project this year. Using the ELIXIR toolkit theme.

[bebatut]

It would be great, yes :)

[paulzierep]

Update: https://github.com/elixir-europe/biohackathon-projects-2024/blob/main/11.md

[supernord]

See example here: https://supernord.github.io/galaxy_codex/project
What do you think? @bebatut and @paulzierep

[paulzierep]

This look great @supernord ; could we also work on the https://supernord.github.io/galaxy_codex/ tool list ? like showing all columns ?

[supernord]

yes 😄
working on this today

[paulzierep]

I am checking with Bert atm

[paulzierep]

Thanks to @bedroesb
we got https://paulzierep.github.io/galaxy_tool_extractor/ now !
So the query builder is part of elixir-toolkit-theme
You can pull the changes from https://github.com/paulzierep/galaxy_tool_extractor/tree/elixir-toolkit-theme if you want to continue @supernord

[paulzierep]

Since this looks really nice, and we assume it will be awesome with some minor changes, we thought we can replace the old html hack style way to create the tables that can be embedded in other places.
Therefore, it would be required to create sub-pages where each table (tools, workflows, trainings) is rendered individually as well -> better for embedding, ad this would be needed for each community as well. @supernord do you want to look into it ? I guess with the current progress, that should be doable.