diff --git a/data/communities/microgalaxy/tools_to_exclude b/data/communities/microgalaxy/tools_to_exclude
index 6f30553a..6384acd3 100644
--- a/data/communities/microgalaxy/tools_to_exclude
+++ b/data/communities/microgalaxy/tools_to_exclude
@@ -1,338 +1,455 @@
-braker
-braker3
-helixer
-logol
-peptimapper
-GAFA
-blast_parser
-gblocks
-hcluster_sg
-hcluster_sg_parser
-miranda
-smart_domains
-t_coffee
-bam2mappingstats
-bamclipper
-bundle_collections
-collapse_collection
-combineJSON
-combine_tabular_collection
-fasta2bed
-fasta_extract
-fastqc_stats
-feht
-kaptive
-mauve_contig_mover
-pangolin
-patrist
-plasmid_profiler_suite
-pseudogenome
-quasitools
-refseq_masher
-seqtk_nml
-spatyper
-spolpred
-wade
-isoplot
-best_regression_subsets
-blat_coverage_report
-blat_mapping
-compute_motif_frequencies_for_all_motifs
-compute_motifs_frequency
-count_gff_features
-ctd_batch
-cummerbund
-delete_overlapping_indels
-divide_pg_snp
-express
-featurecounter
-filter_transcripts_via_tracking
-generate_pc_lda_matrix
-getindelrates_3way
-getindels_2way
-gmaj
-hisat
-indels_3way
-logistic_regression_vif
-maf_cpg_filter
-mapping_to_ucsc
-microsatellite_birthdeath
-microsats_alignment_level
-microsats_mutability
-rcve
-short_reads_figure_high_quality_length
-short_reads_figure_score
-substitution_rates
-substitutions
-tophat
-tophat2
-ucsc_custom_track
-weightedaverage
-windowsplitter
-hgv_fundo
-hgv_hilbertvis
-find_diag_hits
-poisson2test
-AggregateAlignments
-AlignCluster
-CMFinder
-CollectResults
-CollectResultsNoAlign
-GSPAN
-LocARNAGraphClust
-NSPDK
-Plotting
-PrepareForMlocarna
-Preprocessing
-Structure_GSPAN
-augustus
-bamhash
-barcode_collapse
-bionano
-bismark
-blobtoolkit
-blockbuster
-chipseeker
-circexplorer
-crt
-gfastats
-gotohscan
-graphclust
-hifiasm
-homer
-illumina_methylation_analyser
-instagraal
-labels
-methtools
-methyldackel
-metilene
-miclip
-minced
-mitohifi
-openms
-peakachu
-piranha
-platypus
-plotly_ml_performance_plots
-plotly_parallel_coordinates_plot
-plotly_regression_performance_plots
-protease_prediction
-protein_properties
-improviser
-repeat_masker
-antarna
-aresite2
-blockclust
-cmsearch_deoverlap
-cmv
-cofold
-compalignp
-coprarna
-dewseq
-dorina
-dot2ct
-dotknot
-exparna
-graphprot
-htseq-clip
-inforna
-intarna
-kinwalker
-locarna
-mea
-mqc
-nastiseq
-paralyzer
-pipmir
-rcas
-remurna
-ribotaper
-rna_shapes
-rnabob
-rnacode
-rnacommender
-rnalien
-rnasnp
-rnaz
-selectsequencesfrommsa
-sshmm
-targetfinder
-trna_prediction
-vienna_rna
-sailfish
-tgsgapcloser
-uniprot_rest_interface
-vt
-align_back_trans
-chromosome_diagram
-clc_assembly_cell
-count_roi_variants
-coverage_stats
-fasta_filter_by_id
-fastq_filter_by_id
-fastq_pair_names
-fastq_paired_unpaired
-get_orfs_or_cdss
-mummer
-nlstradamus
-predictnls
-protein_analysis
-sample_seqs
-samtools_depad
-samtools_depth
-samtools_idxstats
-seq_composition
-seq_filter_by_id
-seq_filter_by_mapping
-seq_length
-seq_primer_clip
-seq_rename
-seq_select_by_id
-venn_list
-TrimNs
 adapter_removal
 aegean
+AggregateAlignments
+align_back_trans
+AlignCluster
 ampvis2
 anndata
 annotatemyids
+antarna
+aresite2
 arriba
 art
 assembly-stats
 augustus
+augustus
 b2btools
+bam2mappingstats
+bamclipper
+bamhash
+bamparse
+bamtools_filter
+bamtools_split
 bamutil
+barcode_collapse
 baredsc
 barrnap
 bax2bam
 bbtools
 bctools
+bed_to_protein_map
 bellerophon
+best_regression_subsets
 bioinformatics_cafe
+bionano
 bioperl
 biscot
+bismark
+blast_parser
+blast_plus_remote_blastp
+blast_to_scaffold
+blastparser_and_hits
+blastx_to_scaffold
 blastxml_to_gapped_gff3
+blat_coverage_report
+blat_mapping
+blobtoolkit
+blockbuster
+blockclust
+braker
+braker3
+bumbershoot
+bundle_collections
 bwameth
 calculate_contrast_threshold
+calisp
+cap3
+cardinal
+cell-types-analysis
+champ_blocs
 charts
 cherri
+chipseeker
 chira
 chromeister
+chromosome_diagram
+circexplorer
 circexplorer2
 clair3
+clc_assembly_cell
+climate-stripes
+CMFinder
+cmsearch_deoverlap
+cmv
+cofold
 colibread
+collapse_collection
+CollectResults
+CollectResultsNoAlign
+combine_tabular_collection
+combineJSON
+compalignp
+compute_motif_frequencies_for_all_motifs
+compute_motifs_frequency
+consensus_from_alignments
+consolidate_vcfs
+coprarna
+count_gff_features
+count_roi_variants
 coverage_report
+coverage_stats
 crispr_studio
 crosscontamination_barcode_filter
+crt
+ctd_batch
+cummerbund
+custom_pro_db
+custom_pro_db_annotation_data_manager
+data_exploration
+data_manager_eggnog_mapper
+data_manager_eggnog_mapper_abspath
+data-hca
+data-scxa
+dbbuilder
+decoyfasta
 deepsig
+delete_overlapping_indels
 deseq2
+deseq2_normalization
+dewseq
 dexseq
+dia_umpire
+dialignr
+diann
+diapysef
+diffacto
+divide_pg_snp
+dorina
+dot2ct
+dotknot
+droplet-barcode-plot
+dropletutils
 dropletutils
+Ecoregionalization_workflow
 edger
 egsea
 emboss_5
+EMLassemblyline
+encyclopedia
 exomedepth
 exonerate
+exparna
+express
+fasta_extract
+fasta_filter_by_id
 fasta_nucleotide_color_plot
 fasta_stats
-fastani
+fasta2bed
+fastg2protlib
+fastq_filter_by_id
+fastq_pair_names
+fastq_paired_unpaired
+fastq_provider
+fastq_utils
+fastqc_stats
+feature_alignment
+featurecounter
 featurecounts
 feelnc
+feht
 fermikit
 fgsea
+filter_by_fasta_ids
+filter_density
+filter_stats
+filter_transcripts_via_tracking
+filter_vcf
+find_diag_hits
+find_repeats
+fisher_test
 flair
 flash
+flashlfq
+GAFA
+garnett
+gblocks
+gdal
 gecko
 gemini
 geneiobio
+generate_pc_lda_matrix
 genomic_super_signature
+get_orfs_or_cdss
+getindelrates_3way
+getindels_2way
 getorganelle
+gfastats
 gff3_rebase
 gffread
 ggplot2
+gmaj
+gotohscan
+graphclust
+graphprot
+gsc_high_dimensions_visualisation
+GSPAN
+gtf-2-gene-list
+guppy
 gwastools
 hapcut2
 hapog
+hardklor
+hcluster_sg
+hcluster_sg_parser
 heatmap2
 heinz
+helixer
+hgv_fundo
+hgv_hilbertvis
 hicexplorer
 hicstuff
+hifiasm
+high_dim_heatmap
+hisat
 hisat2
 homer
+homer
 htseq_count
+htseq-clip
 hybpiper
+idconvert
 idr
 iedb_api
-integron_finder
-isescan
+illumina_methylation_analyser
+improviser
+indels_3way
+inforna
+instagraal
+intarna
 isoformswitchanalyzer
+isoplot
 jcvi_gff_stats
+kaptive
+kinwalker
+labels
 last
 length_and_gc_content
+lfq_protein_quant
 limma_voom
 links
+locarna
+LocARNAGraphClust
+logistic_regression_vif
+logol
 macs2
+maf_cpg_filter
+maldiquant
+map_peptides_to_bed
+mapping_quality_stats
+mapping_to_ucsc
 masigpro
+mauve_contig_mover
+maxquant
+mea
+mean-per-zone
+meta_proteome_analyzer
+metanovo
+metaquantome
+methtools
+methyldackel
+metilene
+miclip
+microsatellite_birthdeath
+microsats_alignment_level
+microsats_mutability
 migmap
+minced
+miranda
+mircounts
 mirnature
 mitobim
+mitohifi
+moFF
+monocle3
+morpheus
+mqc
+mqppep
+msconvert
+msgfplus
+msms_extractor
+msstats
+msstatstmt
+mt2mq
+multispecies_orthologous_microsats
+mummer
 mummer4
+mz_to_sqlite
+mzml_validator
 naltorfs
+nastiseq
 necat
+nlstradamus
 novoplasty
-obitools
+NSPDK
+oases
 odgi
 ont_fast5_api
+openms
+openms
 optitype
 pangolin
+pangolin
+paralyzer
 parse_mito_blast
 pathview
+pathwaymatcher
+patrist
+peakachu
+pep_pointer
+pepquery
+pepquery2
+peptide_genomic_coordinate
+peptideshaker
+peptimapper
+pepxml_to_xls
+percolator
+pi_db_tools
+pipmir
+piranha
+plasmid_profiler_suite
+platypus
+plotly_ml_performance_plots
+plotly_parallel_coordinates_plot
+plotly_regression_performance_plots
+Plotting
+pmd_fdr
+poisson2test
 polypolish
+predictnls
+PrepareForMlocarna
+Preprocessing
 presto
 pretext
 prinseq
+probecoverage
 progressivemauve
 prot-scriber
+protease_prediction
+protein_analysis
+protein_properties
+proteomiqon_joinquantpepionswithproteins
+proteomiqon_labeledproteinquantification
+proteomiqon_labelfreeproteinquantification
+proteomiqon_mzmltomzlite
+proteomiqon_peptidedb
+proteomiqon_peptidespectrummatching
+proteomiqon_proteininference
+proteomiqon_psmbasedquantification
+proteomiqon_psmstatistics
+proteore_venn_diagram
+pseudogenome
+psm_validation
+psm2sam
+psy-maps
 pureclip
 purge_dups
+pyprophet
 pysradb
+pyteomics
 qq_tools
+quality_filter
+quantp
+quantwiz_iq
+quasitools
 ragtag
 rapidnj
 raven
+rawtools
+rcas
+rcve
 red
+refseq_masher
+regionalgam
+remurna
+repeat_masker
 repeatmasker
 repeatmodeler
+ribotaper
 ribowaltz
+rna_shapes
+rnabob
+rnacode
+rnacommender
+rnalien
 rnaquast
+rnasnp
+rnaz
+rsem
 ruvseq
+sailfish
+salmon-kallisto-mtx-to-10x
 salsa2
+sample_seqs
+samtools_depad
+samtools_depth
+samtools_idxstats
+sashimi_plot
+sc3
 scanpy
+scanpy
+scater
 scater
 schicexplorer
 scikit-bio
+scmap
 scpipe
+scpred
+selectsequencesfrommsa
+seq_composition
+seq_filter_by_id
+seq_filter_by_mapping
+seq_length
+seq_primer_clip
+seq_rename
+seq_select_by_id
 seq2hla
 seqcomplexity
 seqtk
+seqtk_nml
 seqwish
 seurat
+seurat
 shasta
 shorah
+short_reads_figure_high_quality_length
+short_reads_figure_score
 sickle
 sina
 sinto
+sixgill
 slamdunk
 sleuth
+small_rna_clusters
+small_rna_maps
+small_rna_signatures
+smart_domains
 smudgeplot
 sniffles
 snipit
+snv_matrix
 socru
 spaln
+spatyper
+spectrast2spectrast_irt
+spectrast2tsv
+spocc
+spolpred
+sr_bowtie
+sr_bowtie_dataset_annotation
+srs_tools
+sshmm
 stacks
 stacks2
 star_fusion
+stoc
+Structure_GSPAN
 structureharvester
+substitution_rates
+substitutions
+suite_snvphyl
 syndiva
+tarfast5
+targetfinder
 tasmanian_mismatch
 taxonomy_filter_refseq
 tbl2gff3
@@ -340,163 +457,42 @@ te_finder
 telescope
 tetoolkit
 tetyper
+tgsgapcloser
+ThermoRawFileParser
 tn93
+tophat
+tophat2
 transdecoder
-transit
+translate_bed
+translate_bed_sequences
+TrimNs
 trinity
 trinotate
+trna_prediction
 trycycler
 tsebra
 ucsc_blat
+ucsc_custom_track
 umi_tools
+unipept
+uniprot_rest_interface
+uniprotxml_downloader
+validate_fasta_database
+vcf2snvalignment
+venn_list
+verify_map
 verkko
 vg
+vienna_rna
+vigiechiro
 volcanoplot
 vsnp
+vt
+wade
 weather_app
-yahs
-bamtools_filter
-bamtools_split
-ThermoRawFileParser
-bed_to_protein_map
-blast_plus_remote_blastp
-bumbershoot
-calisp
-cardinal
-dbbuilder
-decoyfasta
-dia_umpire
-dialignr
-diann
-diapysef
-diffacto
-data_manager_eggnog_mapper
-data_manager_eggnog_mapper_abspath
-encyclopedia
-fastg2protlib
-feature_alignment
-filter_by_fasta_ids
-flashlfq
-hardklor
-idconvert
-lfq_protein_quant
-maldiquant
-map_peptides_to_bed
-maxquant
-meta_proteome_analyzer
-metanovo
-metaquantome
-moFF
-morpheus
-mqppep
-msconvert
-msgfplus
-msms_extractor
-msstats
-msstatstmt
-mt2mq
-mz_to_sqlite
-openms
-pathwaymatcher
-pep_pointer
-pepquery
-pepquery2
-peptide_genomic_coordinate
-peptideshaker
-pepxml_to_xls
-percolator
-pi_db_tools
-pmd_fdr
-custom_pro_db
-custom_pro_db_annotation_data_manager
-psm2sam
-translate_bed
-proteomiqon_joinquantpepionswithproteins
-proteomiqon_labeledproteinquantification
-proteomiqon_labelfreeproteinquantification
-proteomiqon_mzmltomzlite
-proteomiqon_peptidedb
-proteomiqon_peptidespectrummatching
-proteomiqon_proteininference
-proteomiqon_psmbasedquantification
-proteomiqon_psmstatistics
-proteore_venn_diagram
-psm_validation
-pyprophet
-pyteomics
-quantp
-quantwiz_iq
-rawtools
-sixgill
-spectrast2spectrast_irt
-spectrast2tsv
-translate_bed_sequences
-unipept
-uniprotxml_downloader
-validate_fasta_database
-bamparse
-blast_to_scaffold
-blastparser_and_hits
-blastx_to_scaffold
-cap3
-deseq2_normalization
-fisher_test
-gsc_high_dimensions_visualisation
-guppy
-high_dim_heatmap
-mapping_quality_stats
-mircounts
-oases
-probecoverage
-rsem
-sashimi_plot
-small_rna_clusters
-small_rna_maps
-small_rna_signatures
-sr_bowtie
-sr_bowtie_dataset_annotation
-tarfast5
+weightedaverage
+windowsplitter
+xarray
 xpore
 yac_clipper
-EMLassemblyline
-Ecoregionalization_workflow
-champ_blocs
-consensus_from_alignments
-data_exploration
-xarray
-gdal
-regionalgam
-spocc
-srs_tools
-stoc
-vigiechiro
-climate-stripes
-mean-per-zone
-psy-maps
-droplet-barcode-plot
-fastq_provider
-gtf-2-gene-list
-fastq_utils
-salmon-kallisto-mtx-to-10x
-cell-types-analysis
-data-hca
-data-scxa
-dropletutils
-garnett
-monocle3
-sc3
-scanpy
-scater
-scmap
-scpred
-seurat
-mzml_validator
-consolidate_vcfs
-filter_density
-filter_stats
-filter_vcf
-find_repeats
-snv_matrix
-vcf2snvalignment
-verify_map
-suite_snvphyl
\ No newline at end of file
+yahs
\ No newline at end of file
diff --git a/data/communities/microgalaxy/tools_to_keep b/data/communities/microgalaxy/tools_to_keep
index ee318084..a9c25f7d 100644
--- a/data/communities/microgalaxy/tools_to_keep
+++ b/data/communities/microgalaxy/tools_to_keep
@@ -17,10 +17,14 @@ bayescan
 bbtools
 bcftools
 bedtools
+bigscape
 binning_refiner
 biohansel
 biom_format
 biotradis
+blast_rbh
+blast2go
+blastxml_to_top_descr
 bracken
 busco
 bwa
@@ -40,9 +44,9 @@ cojac
 combine_assembly_stats
 combine_metaphlan_humann
 compare_humann2_output
+compleasm
 concoct
 coverm
-crispr_studio
 cryptogenotyper
 cutadapt
 dada2
@@ -60,8 +64,10 @@ eggnog_mapper
 emboss_5
 ete
 export2graphlan
+ez_histograms
 fargene
 fasta_merge_files_and_filter_unique_sequences
+fastani
 fastp
 fastqc
 fastqe
@@ -99,9 +105,11 @@ icescreen
 idba_ud
 infernal
 instrain
+integron_finder
 interproscan
 iprscan5
 iqtree
+isescan
 itsx
 ivar
 jbrowse
@@ -131,6 +139,7 @@ lotus2
 m6anet
 maaslin2
 mafft
+make_nr
 maker
 mapseq
 mash
@@ -165,13 +174,13 @@ msconvert
 msstatstmt
 multigsea
 multiqc
-multispecies_orthologous_microsats
 mykrobe
 mykrobe_parser
 mz_to_sqlite
 nanocompore
 nanoplot
 nanopolishcomp
+ncbi_blast_plus
 newick_utils
 nextclade
 nextdenovo
@@ -179,6 +188,7 @@ nonpareil
 nucleosome_prediction
 nugen_nudup
 obisindicators
+obitools
 orfipy
 orthofinder
 PAMPA
@@ -202,15 +212,16 @@ pygenometracks
 qiime_add_on
 qiime_core
 qualimap
-quality_filter
 quast
 query_tabular
 quickmerge
 racon
+rasusa
 raxml
 read_it_and_keep
 reago
 recentrifuge
+repeatexplorer2
 rgrnastar
 roary
 rRNA
@@ -222,6 +233,7 @@ sarscov2summary
 scoary
 semibin
 seqkit
+seqprep
 seqsero2
 shovill
 sistr_cmd
@@ -242,11 +254,13 @@ srst2
 staramr
 stringmlst
 structure
+t_coffee
 t2ps
 t2t_report
 taxonomy_krona_chart
 tb_variant_filter
 tb-profiler
+transit
 transtermhp
 TreeBest
 trim_galore
@@ -257,10 +271,11 @@ uniprotxml_downloader
 usher
 valet
 vapor
+varvamp
 vcffilter
 vcfprimers
 vegan
 velvet
 velvet_optimiser
 vsearch
-wtdbg
+wtdbg
\ No newline at end of file