From 90b352c712cda7176757d98d2742160f3f086936 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?B=C3=A9r=C3=A9nice=20Batut?= Date: Fri, 24 May 2024 12:03:42 +0200 Subject: [PATCH] Remove extra repo that are now in planemo monitor --- bin/extract_galaxy_tools.py | 9 +-------- data/conf.yml | 3 --- 2 files changed, 1 insertion(+), 11 deletions(-) diff --git a/bin/extract_galaxy_tools.py b/bin/extract_galaxy_tools.py index 95a19eb9..8c2024b0 100644 --- a/bin/extract_galaxy_tools.py +++ b/bin/extract_galaxy_tools.py @@ -122,9 +122,7 @@ def get_string_content(cf: ContentFile) -> str: return base64.b64decode(cf.content).decode("utf-8") -def get_tool_github_repositories( - g: Github, RepoSelection: Optional[str], run_test: bool, add_extra_repositories: bool = True -) -> List[str]: +def get_tool_github_repositories(g: Github, RepoSelection: Optional[str], run_test: bool) -> List[str]: """ Get list of tool GitHub repositories to parse @@ -150,11 +148,6 @@ def get_tool_github_repositories( repo_l = get_string_content(repo_f).rstrip() repo_list.extend(repo_l.split("\n")) - if ( - add_extra_repositories and "extra-repositories" in configs - ): # add non planemo monitor repositories defined in conf - repo_list = repo_list + configs["extra-repositories"] - print("Parsing repositories from:") for repo in repo_list: print("\t", repo) diff --git a/data/conf.yml b/data/conf.yml index dbf7e082..e69de29b 100644 --- a/data/conf.yml +++ b/data/conf.yml @@ -1,3 +0,0 @@ -extra-repositories: - - https://github.com/qiime2/galaxy-tools - - https://github.com/geraldinepascal/FROGS-wrappers